PDB entry 2hbm

View 2hbm on RCSB PDB site
Description: Structure of the yeast nuclear exosome component, Rrp6p, reveals an interplay between the active site and the HRDC domain; Protein in complex with Mn, Zn, and UMP
Class: hydrolase, gene regulation
Keywords: exosome, RNA metabolism, RNA surveillance, RNA processing
Deposited on 2006-06-14, released 2006-07-25
The last revision prior to the SCOP 1.75 freeze date was dated 2006-08-22, with a file datestamp of 2007-06-28.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.22
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Exosome complex exonuclease RRP6
    Species: Saccharomyces cerevisiae
    Gene: RRP6
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q12149 (2-End)
      • cloning artifact (0-1)
      • engineered (234)
    Domains in SCOP 1.75: d2hbma1, d2hbma2
  • Heterogens: ZN, MN, U, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2hbmA (A:)
gmvekpqlkfkspidnseshpfipllkekpnalkplseslrlvdddennpshyphpyeye
idhqeyspeilqireeipskswddsvpiwvdtstelesmledlkntkeiavdlehhdyrs
yygivclmqistrerdylvdtlklrenlhilnevftnpsivkvfhgafmdiiwlqrdlgl
yvvglfdtyhaskaiglprhslayllenfanfktskkyqladwrirplskpmtaaaradt
hfllniydqlrnkliesnklagvlyesrnvakrrfeyskyrpltpssevyspiekespwk
ilmyqynipperevlvrelyqwrdliarrddesprfvmpnqllaalvaytptdvigvvsl
tngvtehvrqnakllanlirdalrnikntneeatpipssetkadgillet

    Sequence, based on observed residues (ATOM records): (download) 
    >2hbmA (A:)
gmvekpqlkfkspidnseshpfipllkekpnalkplseslrlvdddennpshyphpyeye
idhqeyspeilqireeipskswddsvpiwvdtstelesmledlkntkeiavdlehhdyrs
yygivclmqistrerdylvdtlklrenlhilnevftnpsivkvfhgafmdiiwlqrdlgl
yvvglfdtyhaskaiglprhslayllenfanfktskkyqladwrirplskpmtaaaradt
hfllniydqlrnkliesnklagvlyesrnvakrrfeyskyrpltpssevyspiekespwk
ilmyqynipperevlvrelyqwrdliarrddesprfvmpnqllaalvaytptdvigvvsl
tngvtehvrqnakllanlirdalrnikntn