PDB entry 2h1k

View 2h1k on RCSB PDB site
Description: Crystal structure of the Pdx1 homeodomain in complex with DNA
Class: Transcription/DNA
Keywords: protein-dna complex, Transcription/DNA COMPLEX
Deposited on 2006-05-16, released 2007-03-20
The last revision prior to the SCOPe 2.02 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-19.
Experiment type: XRAY
Resolution: 2.42 Å
R-factor: 0.227
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Pancreatic and duodenal homeobox 1
    Species: Mesocricetus auratus [TaxId:10036]
    Gene: IPF1, PDX1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d2h1ka_
  • Chain 'B':
    Compound: Pancreatic and duodenal homeobox 1
    Species: Mesocricetus auratus [TaxId:10036]
    Gene: IPF1, PDX1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d2h1kb_
  • Chain 'C':
    Compound: 15-mer DNA
  • Chain 'D':
    Compound: 15-mer DNA
  • Chain 'E':
    Compound: 15-mer DNA
  • Chain 'F':
    Compound: 15-mer DNA
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2h1kA (A:)
gsnkrtrtaytraqllelekeflfnkyisrprrvelavmlnlterhikiwfqnrrmkwkk
eed

    Sequence, based on observed residues (ATOM records): (download) 
    >2h1kA (A:)
rtrtaytraqllelekeflfnkyisrprrvelavmlnlterhikiwfqnrrmkwkkee

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2h1kB (B:)
gsnkrtrtaytraqllelekeflfnkyisrprrvelavmlnlterhikiwfqnrrmkwkk
eed

    Sequence, based on observed residues (ATOM records): (download) 
    >2h1kB (B:)
nkrtrtaytraqllelekeflfnkyisrprrvelavmlnlterhikiwfqnrrmkwkkee

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.