PDB entry 2gyk

View 2gyk on RCSB PDB site
Description: Crystal structure of the complex of the Colicin E9 DNase domain with a mutant immunity protein, IMME9 (D51A)
Class: antibiotic/antibiotic inhibitor
Keywords: PROTEIN-PROTEIN COMPLEX, 4-HELIX BUNDLE, DNASE DOMAIN, HNH-MOTIF, antibiotic-antibiotic inhibitor COMPLEX
Deposited on 2006-05-09, released 2007-05-15
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-10-18, with a file datestamp of 2017-10-13.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: N/A
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: colicin-e9 immunity protein
    Species: Escherichia coli [TaxId:83333]
    Gene: IMM9_ECOLI
    Database cross-references and differences (RAF-indexed):
    • Uniprot P13479
      • engineered (50)
    Domains in SCOPe 2.07: d2gyka1
  • Chain 'B':
    Compound: colicin-e9
    Species: Escherichia coli [TaxId:83333]
    Gene: col, cei
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2gykb_
  • Chain 'E':
    Compound: colicin-e9 immunity protein
    Species: Escherichia coli [TaxId:83333]
    Gene: IMM9_ECOLI
    Database cross-references and differences (RAF-indexed):
    • Uniprot P13479
      • engineered (50)
    Domains in SCOPe 2.07: d2gyke_
  • Chain 'F':
    Compound: colicin-e9
    Species: Escherichia coli [TaxId:83333]
    Gene: col, cei
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2gykf_
  • Heterogens: ZN, PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2gykA (A:)
melkhsisdyteaeflqlvtticnadtsseeelvklvthfeemtehpsgsaliyypkegd
ddspsgivntvkqwraangksgfkqg

    Sequence, based on observed residues (ATOM records): (download) 
    >2gykA (A:)
lkhsisdyteaeflqlvtticnadtsseeelvklvthfeemtehpsgsaliyypkegddd
spsgivntvkqwraangksgfkq

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2gykB (B:)
meskrnkpgkatgkgkpvgdkwlddagkdsgapipdriadklrdkefksfddfrkavwee
vskdpelsknlnpsnkssvskgyspftpknqqvggrkvyelhhdkpisqggevydmdnir
vttpkrhidihrgk

    Sequence, based on observed residues (ATOM records): (download) 
    >2gykB (B:)
krnkpgkatgkgkpvgdkwlddagkdsgapipdriadklrdkefksfddfrkavweevsk
dpelsknlnpsnkssvskgyspftpknqqvggrkvyelhhdkpisqggevydmdnirvtt
pkrhidihrg

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2gykE (E:)
melkhsisdyteaeflqlvtticnadtsseeelvklvthfeemtehpsgsaliyypkegd
ddspsgivntvkqwraangksgfkqg

    Sequence, based on observed residues (ATOM records): (download) 
    >2gykE (E:)
lkhsisdyteaeflqlvtticnadtsseeelvklvthfeemtehpsgsaliyypkegddd
spsgivntvkqwraangksgfkq

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2gykF (F:)
meskrnkpgkatgkgkpvgdkwlddagkdsgapipdriadklrdkefksfddfrkavwee
vskdpelsknlnpsnkssvskgyspftpknqqvggrkvyelhhdkpisqggevydmdnir
vttpkrhidihrgk

    Sequence, based on observed residues (ATOM records): (download) 
    >2gykF (F:)
eskrnkpgkatgkgkpvgdkwlddagkdsgapipdriadklrdkefksfddfrkavweev
skdpelsknlnpsnkssvskgyspftpknqqvggrkvyelhhdkpisqggevydmdnirv
ttpkrhidihrg