PDB entry 2gvk
View 2gvk on RCSB PDB site
Description: Crystal structure of a dye-decolorizing peroxidase (DyP) from Bacteroides thetaiotaomicron VPI-5482 at 1.6 A resolution
Class: oxidoreductase
Keywords: pc04261d, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI, Heme peroxidase, OXIDOREDUCTASE
Deposited on
2006-05-02, released
2006-05-16
The last revision prior to the SCOPe 2.06 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-08.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: 0.165
AEROSPACI score: 0.61
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Heme peroxidase
Species: BACTEROIDES THETAIOTAOMICRON [TaxId:226186]
Gene: BT_1219
Database cross-references and differences (RAF-indexed):
- GB AAO76326 (Start-316)
- modified residue (51)
- modified residue (55)
- modified residue (62)
- modified residue (68)
- modified residue (117)
- modified residue (147)
- modified residue (196)
- modified residue (248)
- modified residue (275)
- modified residue (279)
Domains in SCOPe 2.06: d2gvka1 - Heterogens: CL, NA, UNL, EDO, ACY, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2gvkA (A:)
gmnpfqnsfgghipqdvagkqgenvifivynltdspdtvdkvkdvcanfsamirsmrnrf
pdmqfsctmgfgadawtrlfpdkgkpkelstfseikgekytavstpgdllfhirakqmgl
cfefasildeklkgavvsvdethgfrymdgkaiigfvdgtenpavdenpyhfavigeeda
dfaggsyvfvqkyihdmvawnalpveqqekvigrhkfndvelsdeekpgnahnavtnigd
dlkivranmpfantskgeygtyfigyastfsttrrmlenmfigspagntdrlldfstait
gtlffvpsydllgelge
Sequence, based on observed residues (ATOM records): (download)
>2gvkA (A:)
fgghipqdvagkqgenvifivynltdspdtvdkvkdvcanfsamirsmrnrfpdmqfsct
mgfgadawtrlfpdkgkpkelstfseikgekytavstpgdllfhirakqmglcfefasil
deklkgavvsvdethgfrymdgkaiigfvdgtenpavdenpyhfavigeedadfaggsyv
fvqkyihdmvawnalpveqqekvigrhkfndvelsdeekpgnahnavtnigddlkivran
mpfantskgeygtyfigyastfsttrrmlenmfigspagntdrlldfstaitgtlffvps
ydllgelge