PDB entry 2gvk

View 2gvk on RCSB PDB site
Description: Crystal structure of a dye-decolorizing peroxidase (DyP) from Bacteroides thetaiotaomicron VPI-5482 at 1.6 A resolution
Class: oxidoreductase
Keywords: pc04261d, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI, Heme peroxidase, OXIDOREDUCTASE
Deposited on 2006-05-02, released 2006-05-16
The last revision prior to the SCOPe 2.04 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: 0.165
AEROSPACI score: 0.61 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Heme peroxidase
    Species: BACTEROIDES THETAIOTAOMICRON [TaxId:226186]
    Gene: BT_1219
    Database cross-references and differences (RAF-indexed):
    • GB AAO76326 (Start-316)
      • modified residue (51)
      • modified residue (55)
      • modified residue (62)
      • modified residue (68)
      • modified residue (117)
      • modified residue (147)
      • modified residue (196)
      • modified residue (248)
      • modified residue (275)
      • modified residue (279)
    Domains in SCOPe 2.04: d2gvka1
  • Heterogens: CL, NA, UNL, EDO, ACY, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2gvkA (A:)
gmnpfqnsfgghipqdvagkqgenvifivynltdspdtvdkvkdvcanfsamirsmrnrf
pdmqfsctmgfgadawtrlfpdkgkpkelstfseikgekytavstpgdllfhirakqmgl
cfefasildeklkgavvsvdethgfrymdgkaiigfvdgtenpavdenpyhfavigeeda
dfaggsyvfvqkyihdmvawnalpveqqekvigrhkfndvelsdeekpgnahnavtnigd
dlkivranmpfantskgeygtyfigyastfsttrrmlenmfigspagntdrlldfstait
gtlffvpsydllgelge

    Sequence, based on observed residues (ATOM records): (download) 
    >2gvkA (A:)
fgghipqdvagkqgenvifivynltdspdtvdkvkdvcanfsamirsmrnrfpdmqfsct
mgfgadawtrlfpdkgkpkelstfseikgekytavstpgdllfhirakqmglcfefasil
deklkgavvsvdethgfrymdgkaiigfvdgtenpavdenpyhfavigeedadfaggsyv
fvqkyihdmvawnalpveqqekvigrhkfndvelsdeekpgnahnavtnigddlkivran
mpfantskgeygtyfigyastfsttrrmlenmfigspagntdrlldfstaitgtlffvps
ydllgelge