PDB entry 2gtl

View 2gtl on RCSB PDB site
Description: Lumbricus Erythrocruorin at 3.5A resolution
Class: oxygen storage/transport
Keywords: Annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry, triple stranded helical coils
Deposited on 2006-04-28, released 2006-07-18
The last revision prior to the SCOP 1.75 freeze date was dated 2006-08-01, with a file datestamp of 2007-06-28.
Experiment type: XRAY
Resolution: 3.5 Å
R-factor: 0.288
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Extracellular globin 4
    Species: Lumbricus terrestris
    Database cross-references and differences (RAF-indexed):
    • Uniprot P13579 (Start-150)
      • conflict (77)
    Domains in SCOP 1.75: d2gtla1
  • Chain 'B':
    Compound: Extracellular globin 2
    Species: Lumbricus terrestris
    Database cross-references and differences (RAF-indexed):
    • Uniprot P02218 (0-144)
      • conflict (65)
    Domains in SCOP 1.75: d2gtlb1
  • Chain 'C':
    Compound: Extracellular globin-3
    Species: Lumbricus terrestris
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11069
      • conflict (48)
    Domains in SCOP 1.75: d2gtlc1
  • Chain 'D':
    Compound: Hemoglobin chain d1
    Species: Lumbricus terrestris
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2gtld1
  • Chain 'E':
    Compound: Extracellular globin 4
    Species: Lumbricus terrestris
    Database cross-references and differences (RAF-indexed):
    • Uniprot P13579 (Start-150)
      • conflict (77)
    Domains in SCOP 1.75: d2gtle1
  • Chain 'F':
    Compound: Extracellular globin 2
    Species: Lumbricus terrestris
    Database cross-references and differences (RAF-indexed):
    • Uniprot P02218 (0-144)
      • conflict (65)
    Domains in SCOP 1.75: d2gtlf1
  • Chain 'G':
    Compound: Extracellular globin-3
    Species: Lumbricus terrestris
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11069
      • conflict (48)
    Domains in SCOP 1.75: d2gtlg1
  • Chain 'H':
    Compound: Hemoglobin chain d1
    Species: Lumbricus terrestris
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2gtlh1
  • Chain 'I':
    Compound: Extracellular globin 4
    Species: Lumbricus terrestris
    Database cross-references and differences (RAF-indexed):
    • Uniprot P13579 (Start-150)
      • conflict (77)
    Domains in SCOP 1.75: d2gtli1
  • Chain 'J':
    Compound: Extracellular globin 2
    Species: Lumbricus terrestris
    Database cross-references and differences (RAF-indexed):
    • Uniprot P02218 (0-144)
      • conflict (65)
    Domains in SCOP 1.75: d2gtlj1
  • Chain 'K':
    Compound: Extracellular globin-3
    Species: Lumbricus terrestris
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11069
      • conflict (48)
    Domains in SCOP 1.75: d2gtlk1
  • Chain 'L':
    Compound: Hemoglobin chain d1
    Species: Lumbricus terrestris
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2gtll1
  • Chain 'M':
    Compound: Hemoglobin linker chain L1
    Species: Lumbricus terrestris
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2gtlm1, d2gtlm2, d2gtlm3
  • Chain 'N':
    Compound: Extracellular hemoglobin linker L2 subunit
    Species: Lumbricus terrestris
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2gtln1, d2gtln2, d2gtln3
  • Chain 'O':
    Compound: Extracellular hemoglobin linker L3 subunit
    Species: Lumbricus terrestris
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2I742 (0-214)
      • conflict (105)
    Domains in SCOP 1.75: d2gtlo1, d2gtlo2, d2gtlo3
  • Heterogens: CA, ZN, CMO, HEM

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2gtlA (A:)
addedccsyedrreirhiwddvwsssftdrrvaivravfddlfkhyptskalfervkide
pesgefkshlvrvanglkllinllddtlvlqshlghladqhiqrkgvtkeyfrgigeafa
rvlpqvlscfnvdawnrcfhrlvariakdlp

    Sequence, based on observed residues (ATOM records): (download) 
    >2gtlA (A:)
dccsyedrreirhiwddvwsssftdrrvaivravfddlfkhyptskalfervkidepesg
efkshlvrvanglkllinllddtlvlqshlghladqhiqrkgvtkeyfrgigeafarvlp
qvlscfnvdawnrcfhrlvariakdlp

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2gtlB (B:)
kkqcgvleglkvksewgraygsghdreafsqaiwratfaqvpesrslfkrvhgddtshpa
fiahadrvlggldiaistldqpatlkeeldhlqvqhegrkipdnyfdafktailhvvaaq
lgrcydreawdacidhiedgikghh

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2gtlC (C:)
dehehccseedhrivqkqwdilwrdtesskikigfgrllltklakdipevndlfkrvdie
haegpkfsahalrilngldlainllddppaldaaldhlahqhevregvqkahfkkfgeil
atglpqvlddydalawksclkgiltkissrlna

    Sequence, based on observed residues (ATOM records): (download) 
    >2gtlC (C:)
hehccseedhrivqkqwdilwrdtesskikigfgrllltklakdipevndlfkrvdieha
egpkfsahalrilngldlainllddppaldaaldhlahqhevregvqkahfkkfgeilat
glpqvlddydalawksclkgiltkissrl

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2gtlD (D:)
eclvteslkvklqwasafghahervafglelwrdiiddhpeikapfsrvrgdniyspefg
ahsqrvlsglditismldtpdmlaaqlahlkvqhvernlkpeffdiflkhllhvlgdrlg
thfdfgawhdcvdqiidgik

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2gtlE (E:)
addedccsyedrreirhiwddvwsssftdrrvaivravfddlfkhyptskalfervkide
pesgefkshlvrvanglkllinllddtlvlqshlghladqhiqrkgvtkeyfrgigeafa
rvlpqvlscfnvdawnrcfhrlvariakdlp

    Sequence, based on observed residues (ATOM records): (download) 
    >2gtlE (E:)
dccsyedrreirhiwddvwsssftdrrvaivravfddlfkhyptskalfervkidepesg
efkshlvrvanglkllinllddtlvlqshlghladqhiqrkgvtkeyfrgigeafarvlp
qvlscfnvdawnrcfhrlvariakdlp

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2gtlF (F:)
kkqcgvleglkvksewgraygsghdreafsqaiwratfaqvpesrslfkrvhgddtshpa
fiahadrvlggldiaistldqpatlkeeldhlqvqhegrkipdnyfdafktailhvvaaq
lgrcydreawdacidhiedgikghh

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >2gtlG (G:)
dehehccseedhrivqkqwdilwrdtesskikigfgrllltklakdipevndlfkrvdie
haegpkfsahalrilngldlainllddppaldaaldhlahqhevregvqkahfkkfgeil
atglpqvlddydalawksclkgiltkissrlna

    Sequence, based on observed residues (ATOM records): (download) 
    >2gtlG (G:)
hehccseedhrivqkqwdilwrdtesskikigfgrllltklakdipevndlfkrvdieha
egpkfsahalrilngldlainllddppaldaaldhlahqhevregvqkahfkkfgeilat
glpqvlddydalawksclkgiltkissrl

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2gtlH (H:)
eclvteslkvklqwasafghahervafglelwrdiiddhpeikapfsrvrgdniyspefg
ahsqrvlsglditismldtpdmlaaqlahlkvqhvernlkpeffdiflkhllhvlgdrlg
thfdfgawhdcvdqiidgik

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >2gtlI (I:)
addedccsyedrreirhiwddvwsssftdrrvaivravfddlfkhyptskalfervkide
pesgefkshlvrvanglkllinllddtlvlqshlghladqhiqrkgvtkeyfrgigeafa
rvlpqvlscfnvdawnrcfhrlvariakdlp

    Sequence, based on observed residues (ATOM records): (download) 
    >2gtlI (I:)
dccsyedrreirhiwddvwsssftdrrvaivravfddlfkhyptskalfervkidepesg
efkshlvrvanglkllinllddtlvlqshlghladqhiqrkgvtkeyfrgigeafarvlp
qvlscfnvdawnrcfhrlvariakdlp

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2gtlJ (J:)
kkqcgvleglkvksewgraygsghdreafsqaiwratfaqvpesrslfkrvhgddtshpa
fiahadrvlggldiaistldqpatlkeeldhlqvqhegrkipdnyfdafktailhvvaaq
lgrcydreawdacidhiedgikghh

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >2gtlK (K:)
dehehccseedhrivqkqwdilwrdtesskikigfgrllltklakdipevndlfkrvdie
haegpkfsahalrilngldlainllddppaldaaldhlahqhevregvqkahfkkfgeil
atglpqvlddydalawksclkgiltkissrlna

    Sequence, based on observed residues (ATOM records): (download) 
    >2gtlK (K:)
hehccseedhrivqkqwdilwrdtesskikigfgrllltklakdipevndlfkrvdieha
egpkfsahalrilngldlainllddppaldaaldhlahqhevregvqkahfkkfgeilat
glpqvlddydalawksclkgiltkissrl

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2gtlL (L:)
eclvteslkvklqwasafghahervafglelwrdiiddhpeikapfsrvrgdniyspefg
ahsqrvlsglditismldtpdmlaaqlahlkvqhvernlkpeffdiflkhllhvlgdrlg
thfdfgawhdcvdqiidgik

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2gtlM (M:)
rfqylvknqnlhidylakklhdieeeynklthdvdkktirqlkarisnleehhcdehese
crgdvpecihdllfcdgekdcrdgsdedpetcslnithvgssytglatwtscedlnpdha
ivtitaahrksffpnrvwlratlsyeldehdhtvsttqlrgfynfgkrelllaplkgqse
gygvicdfnlgdddhadckivvpsslfvcahfnaqry

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2gtlN (N:)
ldprlganafliirldriieklrtkldeaekidpehfvseidarvtkiegthcekrtfqc
ggneqecisdllvcdghkdchnahdedpdvcdtsvvkagnvfsgtstwhgclaredhvtr
ititaskrrkfftariwlralveselerhgenvtssfnakgyynfasrrlillptddhdd
hlavvcsfnrgdneraechrvteatlhqcadlfvtleehd

  • Chain 'O':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2gtlO (O:)
qshdeiidkliertnkittsishvesllddrldpkrirkagslrhrveeledpscdeheh
qcggddpqcisklfvcdghndcrngedekdctlptkagdkfigdvcfdhctkrrpehmtl
afesssiaafftpiadlhvhieiesetdedesevsmpadgeysfadhrltihppeedglg
lvgefdgynfdrfvghivhelseevcaefifhrkk