PDB entry 2gtl

View 2gtl on RCSB PDB site
Description: Lumbricus Erythrocruorin at 3.5A resolution
Class: oxygen storage/transport
Keywords: Annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry, triple stranded helical coils
Deposited on 2006-04-28, released 2006-07-18
The last revision prior to the SCOP 1.75 freeze date was dated 2006-08-01, with a file datestamp of 2007-06-28.
Experiment type: XRAY
Resolution: 3.5 Å
R-factor: 0.288
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Extracellular globin 4
    Species: Lumbricus terrestris
    Database cross-references and differences (RAF-indexed):
    • Uniprot P13579 (Start-150)
      • conflict (77)
    Domains in SCOP 1.75: d2gtla1
  • Chain 'B':
    Compound: Extracellular globin 2
    Species: Lumbricus terrestris
    Database cross-references and differences (RAF-indexed):
    • Uniprot P02218 (0-144)
      • conflict (65)
    Domains in SCOP 1.75: d2gtlb1
  • Chain 'C':
    Compound: Extracellular globin-3
    Species: Lumbricus terrestris
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11069
      • conflict (48)
    Domains in SCOP 1.75: d2gtlc1
  • Chain 'D':
    Compound: Hemoglobin chain d1
    Species: Lumbricus terrestris
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2gtld1
  • Chain 'E':
    Compound: Extracellular globin 4
    Species: Lumbricus terrestris
    Database cross-references and differences (RAF-indexed):
    • Uniprot P13579 (Start-150)
      • conflict (77)
    Domains in SCOP 1.75: d2gtle1
  • Chain 'F':
    Compound: Extracellular globin 2
    Species: Lumbricus terrestris
    Database cross-references and differences (RAF-indexed):
    • Uniprot P02218 (0-144)
      • conflict (65)
    Domains in SCOP 1.75: d2gtlf1
  • Chain 'G':
    Compound: Extracellular globin-3
    Species: Lumbricus terrestris
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11069
      • conflict (48)
    Domains in SCOP 1.75: d2gtlg1
  • Chain 'H':
    Compound: Hemoglobin chain d1
    Species: Lumbricus terrestris
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2gtlh1
  • Chain 'I':
    Compound: Extracellular globin 4
    Species: Lumbricus terrestris
    Database cross-references and differences (RAF-indexed):
    • Uniprot P13579 (Start-150)
      • conflict (77)
    Domains in SCOP 1.75: d2gtli1
  • Chain 'J':
    Compound: Extracellular globin 2
    Species: Lumbricus terrestris
    Database cross-references and differences (RAF-indexed):
    • Uniprot P02218 (0-144)
      • conflict (65)
    Domains in SCOP 1.75: d2gtlj1
  • Chain 'K':
    Compound: Extracellular globin-3
    Species: Lumbricus terrestris
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11069
      • conflict (48)
    Domains in SCOP 1.75: d2gtlk1
  • Chain 'L':
    Compound: Hemoglobin chain d1
    Species: Lumbricus terrestris
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2gtll1
  • Chain 'M':
    Compound: Hemoglobin linker chain L1
    Species: Lumbricus terrestris
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2gtlm1, d2gtlm2, d2gtlm3
  • Chain 'N':
    Compound: Extracellular hemoglobin linker L2 subunit
    Species: Lumbricus terrestris
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2gtln1, d2gtln2, d2gtln3
  • Chain 'O':
    Compound: Extracellular hemoglobin linker L3 subunit
    Species: Lumbricus terrestris
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2I742 (0-214)
      • conflict (105)
    Domains in SCOP 1.75: d2gtlo1, d2gtlo2, d2gtlo3
  • Heterogens: CA, ZN, CMO, HEM

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2gtlA (A:)
    addedccsyedrreirhiwddvwsssftdrrvaivravfddlfkhyptskalfervkide
    pesgefkshlvrvanglkllinllddtlvlqshlghladqhiqrkgvtkeyfrgigeafa
    rvlpqvlscfnvdawnrcfhrlvariakdlp
    

    Sequence, based on observed residues (ATOM records): (download)
    >2gtlA (A:)
    dccsyedrreirhiwddvwsssftdrrvaivravfddlfkhyptskalfervkidepesg
    efkshlvrvanglkllinllddtlvlqshlghladqhiqrkgvtkeyfrgigeafarvlp
    qvlscfnvdawnrcfhrlvariakdlp
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2gtlB (B:)
    kkqcgvleglkvksewgraygsghdreafsqaiwratfaqvpesrslfkrvhgddtshpa
    fiahadrvlggldiaistldqpatlkeeldhlqvqhegrkipdnyfdafktailhvvaaq
    lgrcydreawdacidhiedgikghh
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >2gtlC (C:)
    dehehccseedhrivqkqwdilwrdtesskikigfgrllltklakdipevndlfkrvdie
    haegpkfsahalrilngldlainllddppaldaaldhlahqhevregvqkahfkkfgeil
    atglpqvlddydalawksclkgiltkissrlna
    

    Sequence, based on observed residues (ATOM records): (download)
    >2gtlC (C:)
    hehccseedhrivqkqwdilwrdtesskikigfgrllltklakdipevndlfkrvdieha
    egpkfsahalrilngldlainllddppaldaaldhlahqhevregvqkahfkkfgeilat
    glpqvlddydalawksclkgiltkissrl
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2gtlD (D:)
    eclvteslkvklqwasafghahervafglelwrdiiddhpeikapfsrvrgdniyspefg
    ahsqrvlsglditismldtpdmlaaqlahlkvqhvernlkpeffdiflkhllhvlgdrlg
    thfdfgawhdcvdqiidgik
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >2gtlE (E:)
    addedccsyedrreirhiwddvwsssftdrrvaivravfddlfkhyptskalfervkide
    pesgefkshlvrvanglkllinllddtlvlqshlghladqhiqrkgvtkeyfrgigeafa
    rvlpqvlscfnvdawnrcfhrlvariakdlp
    

    Sequence, based on observed residues (ATOM records): (download)
    >2gtlE (E:)
    dccsyedrreirhiwddvwsssftdrrvaivravfddlfkhyptskalfervkidepesg
    efkshlvrvanglkllinllddtlvlqshlghladqhiqrkgvtkeyfrgigeafarvlp
    qvlscfnvdawnrcfhrlvariakdlp
    

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2gtlF (F:)
    kkqcgvleglkvksewgraygsghdreafsqaiwratfaqvpesrslfkrvhgddtshpa
    fiahadrvlggldiaistldqpatlkeeldhlqvqhegrkipdnyfdafktailhvvaaq
    lgrcydreawdacidhiedgikghh
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >2gtlG (G:)
    dehehccseedhrivqkqwdilwrdtesskikigfgrllltklakdipevndlfkrvdie
    haegpkfsahalrilngldlainllddppaldaaldhlahqhevregvqkahfkkfgeil
    atglpqvlddydalawksclkgiltkissrlna
    

    Sequence, based on observed residues (ATOM records): (download)
    >2gtlG (G:)
    hehccseedhrivqkqwdilwrdtesskikigfgrllltklakdipevndlfkrvdieha
    egpkfsahalrilngldlainllddppaldaaldhlahqhevregvqkahfkkfgeilat
    glpqvlddydalawksclkgiltkissrl
    

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2gtlH (H:)
    eclvteslkvklqwasafghahervafglelwrdiiddhpeikapfsrvrgdniyspefg
    ahsqrvlsglditismldtpdmlaaqlahlkvqhvernlkpeffdiflkhllhvlgdrlg
    thfdfgawhdcvdqiidgik
    

  • Chain 'I':
    Sequence, based on SEQRES records: (download)
    >2gtlI (I:)
    addedccsyedrreirhiwddvwsssftdrrvaivravfddlfkhyptskalfervkide
    pesgefkshlvrvanglkllinllddtlvlqshlghladqhiqrkgvtkeyfrgigeafa
    rvlpqvlscfnvdawnrcfhrlvariakdlp
    

    Sequence, based on observed residues (ATOM records): (download)
    >2gtlI (I:)
    dccsyedrreirhiwddvwsssftdrrvaivravfddlfkhyptskalfervkidepesg
    efkshlvrvanglkllinllddtlvlqshlghladqhiqrkgvtkeyfrgigeafarvlp
    qvlscfnvdawnrcfhrlvariakdlp
    

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2gtlJ (J:)
    kkqcgvleglkvksewgraygsghdreafsqaiwratfaqvpesrslfkrvhgddtshpa
    fiahadrvlggldiaistldqpatlkeeldhlqvqhegrkipdnyfdafktailhvvaaq
    lgrcydreawdacidhiedgikghh
    

  • Chain 'K':
    Sequence, based on SEQRES records: (download)
    >2gtlK (K:)
    dehehccseedhrivqkqwdilwrdtesskikigfgrllltklakdipevndlfkrvdie
    haegpkfsahalrilngldlainllddppaldaaldhlahqhevregvqkahfkkfgeil
    atglpqvlddydalawksclkgiltkissrlna
    

    Sequence, based on observed residues (ATOM records): (download)
    >2gtlK (K:)
    hehccseedhrivqkqwdilwrdtesskikigfgrllltklakdipevndlfkrvdieha
    egpkfsahalrilngldlainllddppaldaaldhlahqhevregvqkahfkkfgeilat
    glpqvlddydalawksclkgiltkissrl
    

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2gtlL (L:)
    eclvteslkvklqwasafghahervafglelwrdiiddhpeikapfsrvrgdniyspefg
    ahsqrvlsglditismldtpdmlaaqlahlkvqhvernlkpeffdiflkhllhvlgdrlg
    thfdfgawhdcvdqiidgik
    

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2gtlM (M:)
    rfqylvknqnlhidylakklhdieeeynklthdvdkktirqlkarisnleehhcdehese
    crgdvpecihdllfcdgekdcrdgsdedpetcslnithvgssytglatwtscedlnpdha
    ivtitaahrksffpnrvwlratlsyeldehdhtvsttqlrgfynfgkrelllaplkgqse
    gygvicdfnlgdddhadckivvpsslfvcahfnaqry
    

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2gtlN (N:)
    ldprlganafliirldriieklrtkldeaekidpehfvseidarvtkiegthcekrtfqc
    ggneqecisdllvcdghkdchnahdedpdvcdtsvvkagnvfsgtstwhgclaredhvtr
    ititaskrrkfftariwlralveselerhgenvtssfnakgyynfasrrlillptddhdd
    hlavvcsfnrgdneraechrvteatlhqcadlfvtleehd
    

  • Chain 'O':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2gtlO (O:)
    qshdeiidkliertnkittsishvesllddrldpkrirkagslrhrveeledpscdeheh
    qcggddpqcisklfvcdghndcrngedekdctlptkagdkfigdvcfdhctkrrpehmtl
    afesssiaafftpiadlhvhieiesetdedesevsmpadgeysfadhrltihppeedglg
    lvgefdgynfdrfvghivhelseevcaefifhrkk