PDB entry 2gnn

View 2gnn on RCSB PDB site
Description: Crystal Structure of the Orf Virus NZ2 Variant of VEGF-E
Class: hormone/growth factor
Keywords: VEGF, Orf, S-SAD,, HORMONE-GROWTH FACTOR COMPLEX
Deposited on 2006-04-10, released 2006-05-09
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.224
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Vascular endothelial growth factor homolog
    Species: Orf virus [TaxId:10259]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P52584 (6-End)
      • see remark 999 (72)
    Domains in SCOPe 2.06: d2gnna_
  • Chain 'B':
    Compound: Vascular endothelial growth factor homolog
    Species: Orf virus [TaxId:10259]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P52584
      • see remark 999 (72)
    Domains in SCOPe 2.06: d2gnnb_
  • Chain 'C':
    Compound: Vascular endothelial growth factor homolog
    Species: Orf virus [TaxId:10259]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P52584 (6-End)
      • see remark 999 (72)
    Domains in SCOPe 2.06: d2gnnc_
  • Chain 'D':
    Compound: Vascular endothelial growth factor homolog
    Species: Orf virus [TaxId:10259]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P52584
      • see remark 999 (72)
    Domains in SCOPe 2.06: d2gnnd_
  • Heterogens: NAG, CL, SO4, BEN, TRS, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2gnnA (A:)
eaeaefdsntkgwsevlkgseckprpivvpvsethpeltsqrfnppcvtlmrcggccnde
slecvpteevnvtmellgasgsgsngmqrlsfvehkkcdcrprftttpptttrpprrrrv
dhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2gnnA (A:)
dsntkgwsevlkgseckprpivvpvsethpeltsqrfnppcvtlmrcggccndeslecvp
teevnvtmellggmqrlsfvehkkcdcrprft

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2gnnB (B:)
eaeaefdsntkgwsevlkgseckprpivvpvsethpeltsqrfnppcvtlmrcggccnde
slecvpteevnvtmellgasgsgsngmqrlsfvehkkcdcrprftttpptttrpprrrrv
dhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2gnnB (B:)
ntkgwsevlkgseckprpivvpvsethpeltsqrfnppcvtlmrcggccndeslecvpte
evnvtmellgasgsgsngmqrlsfvehkkcdcrpr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2gnnC (C:)
eaeaefdsntkgwsevlkgseckprpivvpvsethpeltsqrfnppcvtlmrcggccnde
slecvpteevnvtmellgasgsgsngmqrlsfvehkkcdcrprftttpptttrpprrrrv
dhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2gnnC (C:)
dsntkgwsevlkgseckprpivvpvsethpesqrfnppcvtlmrcggccndeslecvpte
evnvtmellgmqrlsfvehkkcdcrprftt

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2gnnD (D:)
eaeaefdsntkgwsevlkgseckprpivvpvsethpeltsqrfnppcvtlmrcggccnde
slecvpteevnvtmellgasgsgsngmqrlsfvehkkcdcrprftttpptttrpprrrrv
dhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2gnnD (D:)
tkgwsevlkgseckprpivvpvsethpeltsqrfnppcvtlmrcggccndeslecvptee
vnvtmellgasgsgsngmqrlsfvehkkcdcrp