PDB entry 2glv

View 2glv on RCSB PDB site
Description: Crystal structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(FabZ) mutant(Y100A) from Helicobacter pylori
Class: Lyase
Keywords: FabZ mutant, Lyase
Deposited on 2006-04-05, released 2007-03-13
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.24
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: (3R)-hydroxymyristoyl-acyl carrier protein dehydratase
    Species: Helicobacter pylori [TaxId:102617]
    Gene: FabZ
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5G940 (Start-170)
      • engineered (111)
    Domains in SCOPe 2.06: d2glva_
  • Chain 'B':
    Compound: (3R)-hydroxymyristoyl-acyl carrier protein dehydratase
    Species: Helicobacter pylori [TaxId:102617]
    Gene: FabZ
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5G940
      • engineered (111)
    Domains in SCOPe 2.06: d2glvb_
  • Chain 'C':
    Compound: (3R)-hydroxymyristoyl-acyl carrier protein dehydratase
    Species: Helicobacter pylori [TaxId:102617]
    Gene: FabZ
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5G940 (Start-170)
      • engineered (111)
    Domains in SCOPe 2.06: d2glvc_
  • Chain 'D':
    Compound: (3R)-hydroxymyristoyl-acyl carrier protein dehydratase
    Species: Helicobacter pylori [TaxId:102617]
    Gene: FabZ
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5G940 (Start-170)
      • engineered (111)
    Domains in SCOPe 2.06: d2glvd_
  • Chain 'E':
    Compound: (3R)-hydroxymyristoyl-acyl carrier protein dehydratase
    Species: Helicobacter pylori [TaxId:102617]
    Gene: FabZ
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5G940 (Start-170)
      • engineered (111)
    Domains in SCOPe 2.06: d2glve_
  • Chain 'F':
    Compound: (3R)-hydroxymyristoyl-acyl carrier protein dehydratase
    Species: Helicobacter pylori [TaxId:102617]
    Gene: FabZ
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5G940 (Start-170)
      • engineered (111)
    Domains in SCOPe 2.06: d2glvf_
  • Chain 'G':
    Compound: (3R)-hydroxymyristoyl-acyl carrier protein dehydratase
    Species: Helicobacter pylori [TaxId:102617]
    Gene: FabZ
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5G940
      • engineered (111)
    Domains in SCOPe 2.06: d2glvg_
  • Chain 'H':
    Compound: (3R)-hydroxymyristoyl-acyl carrier protein dehydratase
    Species: Helicobacter pylori [TaxId:102617]
    Gene: FabZ
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5G940
      • engineered (111)
    Domains in SCOPe 2.06: d2glvh_
  • Chain 'I':
    Compound: (3R)-hydroxymyristoyl-acyl carrier protein dehydratase
    Species: Helicobacter pylori [TaxId:102617]
    Gene: FabZ
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5G940 (Start-170)
      • engineered (111)
    Domains in SCOPe 2.06: d2glvi_
  • Chain 'J':
    Compound: (3R)-hydroxymyristoyl-acyl carrier protein dehydratase
    Species: Helicobacter pylori [TaxId:102617]
    Gene: FabZ
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5G940 (Start-170)
      • engineered (111)
    Domains in SCOPe 2.06: d2glvj_
  • Chain 'K':
    Compound: (3R)-hydroxymyristoyl-acyl carrier protein dehydratase
    Species: Helicobacter pylori [TaxId:102617]
    Gene: FabZ
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5G940 (Start-170)
      • engineered (111)
    Domains in SCOPe 2.06: d2glvk_
  • Chain 'L':
    Compound: (3R)-hydroxymyristoyl-acyl carrier protein dehydratase
    Species: Helicobacter pylori [TaxId:102617]
    Gene: FabZ
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5G940 (Start-170)
      • engineered (111)
    Domains in SCOPe 2.06: d2glvl_
  • Heterogens: CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2glvA (A:)
    mrgshhhhhhgsmeqshqnlqsqffiehilqilphrypmllvdritelqanqkivaykni
    tfnedvfnghfpnkpifpgvlivegmaqsggflaftslwgfdpeiaktkivafmtidkvk
    fripvtpgdrleyhlevlkhkgmiwqvggtaqvdgkvvaeaelkamiaere
    

    Sequence, based on observed residues (ATOM records): (download)
    >2glvA (A:)
    lqsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfpnkpifpg
    vlivegmaqsggflaftslwgfdpeiaktkivafmtidkvkfripvtpgdrleyhlevlk
    hkgmiwqvggtaqvdgkvvaeaelkamiaere
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2glvB (B:)
    mrgshhhhhhgsmeqshqnlqsqffiehilqilphrypmllvdritelqanqkivaykni
    tfnedvfnghfpnkpifpgvlivegmaqsggflaftslwgfdpeiaktkivafmtidkvk
    fripvtpgdrleyhlevlkhkgmiwqvggtaqvdgkvvaeaelkamiaere
    

    Sequence, based on observed residues (ATOM records): (download)
    >2glvB (B:)
    lqsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfpnkpifpg
    vlivegmaqsggflaftslwgfdpeiaktkivafmtidkvkfripvtpgdrleyhlevlk
    hkgmiwqvggtaqvdgkvvaeaelkamiae
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >2glvC (C:)
    mrgshhhhhhgsmeqshqnlqsqffiehilqilphrypmllvdritelqanqkivaykni
    tfnedvfnghfpnkpifpgvlivegmaqsggflaftslwgfdpeiaktkivafmtidkvk
    fripvtpgdrleyhlevlkhkgmiwqvggtaqvdgkvvaeaelkamiaere
    

    Sequence, based on observed residues (ATOM records): (download)
    >2glvC (C:)
    lqsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfpnkpifpg
    vlivegmaqsggflaftslwgfdpeiaktkivafmtidkvkfripvtpgdrleyhlevlk
    hkgmiwqvggtaqvdgkvvaeaelkamiaere
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >2glvD (D:)
    mrgshhhhhhgsmeqshqnlqsqffiehilqilphrypmllvdritelqanqkivaykni
    tfnedvfnghfpnkpifpgvlivegmaqsggflaftslwgfdpeiaktkivafmtidkvk
    fripvtpgdrleyhlevlkhkgmiwqvggtaqvdgkvvaeaelkamiaere
    

    Sequence, based on observed residues (ATOM records): (download)
    >2glvD (D:)
    qsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfpnkpifpgv
    livegmaqsggflaftslwgfdpeiaktkivafmtidkvkfripvtpgdrleyhlevlkh
    kgmiwqvggtaqvdgkvvaeaelkamiaere
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >2glvE (E:)
    mrgshhhhhhgsmeqshqnlqsqffiehilqilphrypmllvdritelqanqkivaykni
    tfnedvfnghfpnkpifpgvlivegmaqsggflaftslwgfdpeiaktkivafmtidkvk
    fripvtpgdrleyhlevlkhkgmiwqvggtaqvdgkvvaeaelkamiaere
    

    Sequence, based on observed residues (ATOM records): (download)
    >2glvE (E:)
    qsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfpnkpifpgv
    livegmaqsggflaftslwgfdpeiaktkivafmtidkvkfripvtpgdrleyhlevlkh
    kgmiwqvggtaqvdgkvvaeaelkamiaere
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >2glvF (F:)
    mrgshhhhhhgsmeqshqnlqsqffiehilqilphrypmllvdritelqanqkivaykni
    tfnedvfnghfpnkpifpgvlivegmaqsggflaftslwgfdpeiaktkivafmtidkvk
    fripvtpgdrleyhlevlkhkgmiwqvggtaqvdgkvvaeaelkamiaere
    

    Sequence, based on observed residues (ATOM records): (download)
    >2glvF (F:)
    lqsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfpnkpifpg
    vlivegmaqsggflaftslwgfdpeiaktkivafmtidkvkfripvtpgdrleyhlevlk
    hkgmiwqvggtaqvdgkvvaeaelkamiaere
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >2glvG (G:)
    mrgshhhhhhgsmeqshqnlqsqffiehilqilphrypmllvdritelqanqkivaykni
    tfnedvfnghfpnkpifpgvlivegmaqsggflaftslwgfdpeiaktkivafmtidkvk
    fripvtpgdrleyhlevlkhkgmiwqvggtaqvdgkvvaeaelkamiaere
    

    Sequence, based on observed residues (ATOM records): (download)
    >2glvG (G:)
    qsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfpnkpifpgv
    livegmaqsggflaftslwgfdpeiaktkivafmtidkvkfripvtpgdrleyhlevlkh
    kgmiwqvggtaqvdgkvvaeaelkamiaer
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >2glvH (H:)
    mrgshhhhhhgsmeqshqnlqsqffiehilqilphrypmllvdritelqanqkivaykni
    tfnedvfnghfpnkpifpgvlivegmaqsggflaftslwgfdpeiaktkivafmtidkvk
    fripvtpgdrleyhlevlkhkgmiwqvggtaqvdgkvvaeaelkamiaere
    

    Sequence, based on observed residues (ATOM records): (download)
    >2glvH (H:)
    sqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfpnkpifpgvl
    ivegmaqsggflaftslwgfdpeiaktkivafmtidkvkfripvtpgdrleyhlevlkhk
    gmiwqvggtaqvdgkvvaeaelkamiae
    

  • Chain 'I':
    Sequence, based on SEQRES records: (download)
    >2glvI (I:)
    mrgshhhhhhgsmeqshqnlqsqffiehilqilphrypmllvdritelqanqkivaykni
    tfnedvfnghfpnkpifpgvlivegmaqsggflaftslwgfdpeiaktkivafmtidkvk
    fripvtpgdrleyhlevlkhkgmiwqvggtaqvdgkvvaeaelkamiaere
    

    Sequence, based on observed residues (ATOM records): (download)
    >2glvI (I:)
    lqsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfpnkpifpg
    vlivegmaqsggflaftslwgfdpeiaktkivafmtidkvkfripvtpgdrleyhlevlk
    hkgmiwqvggtaqvdgkvvaeaelkamiaere
    

  • Chain 'J':
    Sequence, based on SEQRES records: (download)
    >2glvJ (J:)
    mrgshhhhhhgsmeqshqnlqsqffiehilqilphrypmllvdritelqanqkivaykni
    tfnedvfnghfpnkpifpgvlivegmaqsggflaftslwgfdpeiaktkivafmtidkvk
    fripvtpgdrleyhlevlkhkgmiwqvggtaqvdgkvvaeaelkamiaere
    

    Sequence, based on observed residues (ATOM records): (download)
    >2glvJ (J:)
    lqsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfpnkpifpg
    vlivegmaqsggflaftslwgfdpeiaktkivafmtidkvkfripvtpgdrleyhlevlk
    hkgmiwqvggtaqvdgkvvaeaelkamiaere
    

  • Chain 'K':
    Sequence, based on SEQRES records: (download)
    >2glvK (K:)
    mrgshhhhhhgsmeqshqnlqsqffiehilqilphrypmllvdritelqanqkivaykni
    tfnedvfnghfpnkpifpgvlivegmaqsggflaftslwgfdpeiaktkivafmtidkvk
    fripvtpgdrleyhlevlkhkgmiwqvggtaqvdgkvvaeaelkamiaere
    

    Sequence, based on observed residues (ATOM records): (download)
    >2glvK (K:)
    lqsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfpnkpifpg
    vlivegmaqsggflaftslwgfdpeiaktkivafmtidkvkfripvtpgdrleyhlevlk
    hkgmiwqvggtaqvdgkvvaeaelkamiaere
    

  • Chain 'L':
    Sequence, based on SEQRES records: (download)
    >2glvL (L:)
    mrgshhhhhhgsmeqshqnlqsqffiehilqilphrypmllvdritelqanqkivaykni
    tfnedvfnghfpnkpifpgvlivegmaqsggflaftslwgfdpeiaktkivafmtidkvk
    fripvtpgdrleyhlevlkhkgmiwqvggtaqvdgkvvaeaelkamiaere
    

    Sequence, based on observed residues (ATOM records): (download)
    >2glvL (L:)
    qsqffiehilqilphrypmllvdritelqanqkivayknitfnedvfnghfpnkpifpgv
    livegmaqsggflaftslwgfdpeiaktkivafmtidkvkfripvtpgdrleyhlevlkh
    kgmiwqvggtaqvdgkvvaeaelkamiaere