PDB entry 2gjw

View 2gjw on RCSB PDB site
Description: RNA Recognition and Cleavage by an Splicing Endonuclease
Class: Hydrolase/RNA
Keywords: Bulge-Helix-Bulge RNA-protein complex, Splicing Endonuclease Af, Hydrolase/RNA COMPLEX
Deposited on 2006-03-31, released 2006-09-12
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.85 Å
R-factor: 0.25
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: tRNA-splicing endonuclease
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Gene: EndA
    Database cross-references and differences (RAF-indexed):
    • Uniprot O29362 (9-312)
      • expression tag (5-8)
      • see remark 999 (159)
      • see remark 999 (75)
    Domains in SCOPe 2.07: d2gjwa1, d2gjwa2, d2gjwa3, d2gjwa4, d2gjwa5
  • Chain 'B':
    Compound: tRNA-splicing endonuclease
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Gene: EndA
    Database cross-references and differences (RAF-indexed):
    • Uniprot O29362 (10-End)
      • expression tag (9)
      • see remark 999 (160)
      • see remark 999 (76)
    Domains in SCOPe 2.07: d2gjwb1, d2gjwb2, d2gjwb3, d2gjwb4, d2gjwb5
  • Chain 'C':
    Compound: tRNA-splicing endonuclease
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Gene: EndA
    Database cross-references and differences (RAF-indexed):
    • Uniprot O29362 (10-End)
      • expression tag (6-9)
      • see remark 999 (160)
      • see remark 999 (76)
    Domains in SCOPe 2.07: d2gjwc1, d2gjwc2, d2gjwc3, d2gjwc4, d2gjwc5
  • Chain 'D':
    Compound: tRNA-splicing endonuclease
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Gene: EndA
    Database cross-references and differences (RAF-indexed):
    • Uniprot O29362 (9-312)
      • see remark 999 (159)
      • see remark 999 (75)
    Domains in SCOPe 2.07: d2gjwd1, d2gjwd2, d2gjwd3, d2gjwd4
  • Chain 'E':
    Compound: 5'-r(*gp*cp*gp*ap*cp*cp*gp*ap*cp*cp*ap*(du)p*ap*gp*cp*up*gp*cp*a)-3'
  • Chain 'F':
    Compound: 5'-r(*up*gp*cp*ap*gp*cp*gp*gp*up*cp*ap*(a23))-3'
  • Chain 'H':
    Compound: 5'-r(*ap*gp*gp*up*cp*gp*c)-3'
  • Chain 'I':
    Compound: 5'-r(*gp*cp*gp*ap*cp*cp*gp*ap*cp*cp*ap*(du)p*ap*gp*cp*up*gp*cp*a)-3'
  • Chain 'J':
    Compound: 5'-r(*up*gp*cp*ap*gp*cp*gp*gp*up*cp*ap*(a23))-3'
  • Chain 'L':
    Compound: 5'-r(*ap*gp*gp*up*cp*gp*c)-3'

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2gjwA (A:)
    mhhhhhhhhiggdfavvkakkslerrgfgvkrgdkiylhplevvylqikgiesfgeledv
    lswaesrmedfstyyfvyedlrdrgnkvkiqgeflltkkpylpiserktirmeeiaekar
    nfdelrlavvdeeseityfrvyepdmmgeqkeelpeiagvlsdeyvitkqteifsryfyg
    sekgdlvtlslieslylldlgklnllnadreelvkrarevernfdrryevyrnlkergfv
    vktgfkfgsefrvyrkvesvddlphseylvdiadsreirlidlaravrlaqnvrkrmvfa
    ygknylcfervkv
    

    Sequence, based on observed residues (ATOM records): (download)
    >2gjwA (A:)
    hhhhiggdfavvkakkslerrgfgvkrgdkiylhplevvylqikgiesfgeledvlswae
    srmedfstyyfvyedlrdrgnkvkiqgeflltkkpylpiserktirmeeiaekarnfdel
    rlavvdeeseityfrvyepdmmgeqkeelpeiagvlsdeyvitkqteifsryfygsekgd
    lvtlslieslylldlgklnllnadreelvkrarevernfdrryevyrnlkergfvvktgf
    kfgsefrvyrkvesvddlphseylvdiadsreirlidlaravrlaqnvrkrmvfaygkny
    lcfervkv
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2gjwB (B:)
    mhhhhhhhhiggdfavvkakkslerrgfgvkrgdkiylhplevvylqikgiesfgeledv
    lswaesrmedfstyyfvyedlrdrgnkvkiqgeflltkkpylpiserktirmeeiaekar
    nfdelrlavvdeeseityfrvyepdmmgeqkeelpeiagvlsdeyvitkqteifsryfyg
    sekgdlvtlslieslylldlgklnllnadreelvkrarevernfdrryevyrnlkergfv
    vktgfkfgsefrvyrkvesvddlphseylvdiadsreirlidlaravrlaqnvrkrmvfa
    ygknylcfervkv
    

    Sequence, based on observed residues (ATOM records): (download)
    >2gjwB (B:)
    iggdfavvkakkslerrgfgvkrgdkiylhplevvylqikgiesfgeledvlswaesrme
    dfstyyfvyedlrdrgnkvkiqgeflltkkpylpiserktirmeeiaekarnfdelrlav
    vdeeseityfrvyepdmmgeqkeelpeiagvlsdeyvitkqteifsryfygsekgdlvtl
    slieslylldlgklnllnadreelvkrarevernfdrryevyrnlkergfvvktgfkfgs
    efrvyrkvesvddlphseylvdiadsreirlidlaravrlaqnvrkrmvfaygknylcfe
    rvkv
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >2gjwC (C:)
    mhhhhhhhhiggdfavvkakkslerrgfgvkrgdkiylhplevvylqikgiesfgeledv
    lswaesrmedfstyyfvyedlrdrgnkvkiqgeflltkkpylpiserktirmeeiaekar
    nfdelrlavvdeeseityfrvyepdmmgeqkeelpeiagvlsdeyvitkqteifsryfyg
    sekgdlvtlslieslylldlgklnllnadreelvkrarevernfdrryevyrnlkergfv
    vktgfkfgsefrvyrkvesvddlphseylvdiadsreirlidlaravrlaqnvrkrmvfa
    ygknylcfervkv
    

    Sequence, based on observed residues (ATOM records): (download)
    >2gjwC (C:)
    hhhiggdfavvkakkslerrgfgvkrgdkiylhplevvylqikgiesfgeledvlswaes
    rmedfstyyfvyedlrdrgnkvkiqgeflltkkpylpiserktirmeeiaekarnfdelr
    lavvdeeseityfrvyepdmmgeqkeelpeiagvlsdeyvitkqteifsryfygsekgdl
    vtlslieslylldlgklnllnadreelvkrarevernfdrryevyrnlkergfvvktgfk
    fgsefrvyrkvesvddlphseylvdiadsreirlidlaravrlaqnvrkrmvfaygknyl
    cfervkv
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >2gjwD (D:)
    mhhhhhhhhiggdfavvkakkslerrgfgvkrgdkiylhplevvylqikgiesfgeledv
    lswaesrmedfstyyfvyedlrdrgnkvkiqgeflltkkpylpiserktirmeeiaekar
    nfdelrlavvdeeseityfrvyepdmmgeqkeelpeiagvlsdeyvitkqteifsryfyg
    sekgdlvtlslieslylldlgklnllnadreelvkrarevernfdrryevyrnlkergfv
    vktgfkfgsefrvyrkvesvddlphseylvdiadsreirlidlaravrlaqnvrkrmvfa
    ygknylcfervkv
    

    Sequence, based on observed residues (ATOM records): (download)
    >2gjwD (D:)
    iggdfavvkakkslerrgfgvkrgdkiylhplevvylqikgiesfgeledvlswaesrme
    dfstyyfvyedlrdrgnkvkiqgeflltkkpylpiserktirmeeiaekarnfdelrlav
    vdeeseityfrvyepdmmgeqkeelpeiagvlsdeyvitkqteifsryfygsekgdlvtl
    slieslylldlgklnllnadreelvkrarevernfdrryevyrnlkergfvvktgfkfgs
    efrvyrkvesvddlphseylvdiadsreirlidlaravrlaqnvrkrmvfaygknylcfe
    rvkv
    

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.

  • Chain 'L':
    No sequence available.