PDB entry 2gjw
View 2gjw on RCSB PDB site
Description: RNA Recognition and Cleavage by an Splicing Endonuclease
Class: Hydrolase/RNA
Keywords: Bulge-Helix-Bulge RNA-protein complex, Splicing Endonuclease Af, Hydrolase/RNA COMPLEX
Deposited on
2006-03-31, released
2006-09-12
The last revision prior to the SCOPe 2.07 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2.85 Å
R-factor: 0.25
AEROSPACI score: 0.21
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: tRNA-splicing endonuclease
Species: Archaeoglobus fulgidus [TaxId:2234]
Gene: EndA
Database cross-references and differences (RAF-indexed):
- Uniprot O29362 (9-312)
- expression tag (5-8)
- see remark 999 (159)
- see remark 999 (75)
Domains in SCOPe 2.07: d2gjwa1, d2gjwa2, d2gjwa3, d2gjwa4, d2gjwa5 - Chain 'B':
Compound: tRNA-splicing endonuclease
Species: Archaeoglobus fulgidus [TaxId:2234]
Gene: EndA
Database cross-references and differences (RAF-indexed):
- Uniprot O29362 (10-End)
- expression tag (9)
- see remark 999 (160)
- see remark 999 (76)
Domains in SCOPe 2.07: d2gjwb1, d2gjwb2, d2gjwb3, d2gjwb4, d2gjwb5 - Chain 'C':
Compound: tRNA-splicing endonuclease
Species: Archaeoglobus fulgidus [TaxId:2234]
Gene: EndA
Database cross-references and differences (RAF-indexed):
- Uniprot O29362 (10-End)
- expression tag (6-9)
- see remark 999 (160)
- see remark 999 (76)
Domains in SCOPe 2.07: d2gjwc1, d2gjwc2, d2gjwc3, d2gjwc4, d2gjwc5 - Chain 'D':
Compound: tRNA-splicing endonuclease
Species: Archaeoglobus fulgidus [TaxId:2234]
Gene: EndA
Database cross-references and differences (RAF-indexed):
- Uniprot O29362 (9-312)
- see remark 999 (159)
- see remark 999 (75)
Domains in SCOPe 2.07: d2gjwd1, d2gjwd2, d2gjwd3, d2gjwd4 - Chain 'E':
Compound: 5'-r(*gp*cp*gp*ap*cp*cp*gp*ap*cp*cp*ap*(du)p*ap*gp*cp*up*gp*cp*a)-3'
- Chain 'F':
Compound: 5'-r(*up*gp*cp*ap*gp*cp*gp*gp*up*cp*ap*(a23))-3'
- Chain 'H':
Compound: 5'-r(*ap*gp*gp*up*cp*gp*c)-3'
- Chain 'I':
Compound: 5'-r(*gp*cp*gp*ap*cp*cp*gp*ap*cp*cp*ap*(du)p*ap*gp*cp*up*gp*cp*a)-3'
- Chain 'J':
Compound: 5'-r(*up*gp*cp*ap*gp*cp*gp*gp*up*cp*ap*(a23))-3'
- Chain 'L':
Compound: 5'-r(*ap*gp*gp*up*cp*gp*c)-3'
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2gjwA (A:)
mhhhhhhhhiggdfavvkakkslerrgfgvkrgdkiylhplevvylqikgiesfgeledv
lswaesrmedfstyyfvyedlrdrgnkvkiqgeflltkkpylpiserktirmeeiaekar
nfdelrlavvdeeseityfrvyepdmmgeqkeelpeiagvlsdeyvitkqteifsryfyg
sekgdlvtlslieslylldlgklnllnadreelvkrarevernfdrryevyrnlkergfv
vktgfkfgsefrvyrkvesvddlphseylvdiadsreirlidlaravrlaqnvrkrmvfa
ygknylcfervkv
Sequence, based on observed residues (ATOM records): (download)
>2gjwA (A:)
hhhhiggdfavvkakkslerrgfgvkrgdkiylhplevvylqikgiesfgeledvlswae
srmedfstyyfvyedlrdrgnkvkiqgeflltkkpylpiserktirmeeiaekarnfdel
rlavvdeeseityfrvyepdmmgeqkeelpeiagvlsdeyvitkqteifsryfygsekgd
lvtlslieslylldlgklnllnadreelvkrarevernfdrryevyrnlkergfvvktgf
kfgsefrvyrkvesvddlphseylvdiadsreirlidlaravrlaqnvrkrmvfaygkny
lcfervkv
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2gjwB (B:)
mhhhhhhhhiggdfavvkakkslerrgfgvkrgdkiylhplevvylqikgiesfgeledv
lswaesrmedfstyyfvyedlrdrgnkvkiqgeflltkkpylpiserktirmeeiaekar
nfdelrlavvdeeseityfrvyepdmmgeqkeelpeiagvlsdeyvitkqteifsryfyg
sekgdlvtlslieslylldlgklnllnadreelvkrarevernfdrryevyrnlkergfv
vktgfkfgsefrvyrkvesvddlphseylvdiadsreirlidlaravrlaqnvrkrmvfa
ygknylcfervkv
Sequence, based on observed residues (ATOM records): (download)
>2gjwB (B:)
iggdfavvkakkslerrgfgvkrgdkiylhplevvylqikgiesfgeledvlswaesrme
dfstyyfvyedlrdrgnkvkiqgeflltkkpylpiserktirmeeiaekarnfdelrlav
vdeeseityfrvyepdmmgeqkeelpeiagvlsdeyvitkqteifsryfygsekgdlvtl
slieslylldlgklnllnadreelvkrarevernfdrryevyrnlkergfvvktgfkfgs
efrvyrkvesvddlphseylvdiadsreirlidlaravrlaqnvrkrmvfaygknylcfe
rvkv
- Chain 'C':
Sequence, based on SEQRES records: (download)
>2gjwC (C:)
mhhhhhhhhiggdfavvkakkslerrgfgvkrgdkiylhplevvylqikgiesfgeledv
lswaesrmedfstyyfvyedlrdrgnkvkiqgeflltkkpylpiserktirmeeiaekar
nfdelrlavvdeeseityfrvyepdmmgeqkeelpeiagvlsdeyvitkqteifsryfyg
sekgdlvtlslieslylldlgklnllnadreelvkrarevernfdrryevyrnlkergfv
vktgfkfgsefrvyrkvesvddlphseylvdiadsreirlidlaravrlaqnvrkrmvfa
ygknylcfervkv
Sequence, based on observed residues (ATOM records): (download)
>2gjwC (C:)
hhhiggdfavvkakkslerrgfgvkrgdkiylhplevvylqikgiesfgeledvlswaes
rmedfstyyfvyedlrdrgnkvkiqgeflltkkpylpiserktirmeeiaekarnfdelr
lavvdeeseityfrvyepdmmgeqkeelpeiagvlsdeyvitkqteifsryfygsekgdl
vtlslieslylldlgklnllnadreelvkrarevernfdrryevyrnlkergfvvktgfk
fgsefrvyrkvesvddlphseylvdiadsreirlidlaravrlaqnvrkrmvfaygknyl
cfervkv
- Chain 'D':
Sequence, based on SEQRES records: (download)
>2gjwD (D:)
mhhhhhhhhiggdfavvkakkslerrgfgvkrgdkiylhplevvylqikgiesfgeledv
lswaesrmedfstyyfvyedlrdrgnkvkiqgeflltkkpylpiserktirmeeiaekar
nfdelrlavvdeeseityfrvyepdmmgeqkeelpeiagvlsdeyvitkqteifsryfyg
sekgdlvtlslieslylldlgklnllnadreelvkrarevernfdrryevyrnlkergfv
vktgfkfgsefrvyrkvesvddlphseylvdiadsreirlidlaravrlaqnvrkrmvfa
ygknylcfervkv
Sequence, based on observed residues (ATOM records): (download)
>2gjwD (D:)
iggdfavvkakkslerrgfgvkrgdkiylhplevvylqikgiesfgeledvlswaesrme
dfstyyfvyedlrdrgnkvkiqgeflltkkpylpiserktirmeeiaekarnfdelrlav
vdeeseityfrvyepdmmgeqkeelpeiagvlsdeyvitkqteifsryfygsekgdlvtl
slieslylldlgklnllnadreelvkrarevernfdrryevyrnlkergfvvktgfkfgs
efrvyrkvesvddlphseylvdiadsreirlidlaravrlaqnvrkrmvfaygknylcfe
rvkv
- Chain 'E':
No sequence available.
- Chain 'F':
No sequence available.
- Chain 'H':
No sequence available.
- Chain 'I':
No sequence available.
- Chain 'J':
No sequence available.
- Chain 'L':
No sequence available.