PDB entry 2gjj

View 2gjj on RCSB PDB site
Description: Crystal structure of a single chain antibody scA21 against Her2/ErbB2
Class: immune system
Keywords: Ig family, scFv, IMMUNE SYSTEM
Deposited on 2006-03-31, released 2006-10-01
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-10-18, with a file datestamp of 2017-10-13.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: A21 single-chain antibody fragment against erbB2
    Species: Mus musculus [TaxId:10090]
    Gene: scA21
    Database cross-references and differences (RAF-indexed):
    • GB AAL91085 (4-117)
      • expression tag (2-3)
      • linker (118)
      • conflict (141)
      • conflict (230)
    • GB AAL91083 (138-End)
    Domains in SCOPe 2.08: d2gjja1, d2gjja2, d2gjja3
  • Chain 'B':
    Compound: A21 single-chain antibody fragment against erbB2
    Species: Mus musculus [TaxId:10090]
    Gene: scA21
    Database cross-references and differences (RAF-indexed):
    • GB AAL91085 (4-End)
      • expression tag (2-3)
      • conflict (141)
      • conflict (230)
    • GB AAL91083 (138-End)
    Domains in SCOPe 2.08: d2gjjb1, d2gjjb2, d2gjjb3
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2gjjA (A:)
eaeadivltqtpsslpvsvgekvtmtckssqtllysnnqknylawyqqkpgqspkllisw
aftrksgvpdrftgsgsgtdftltigsvkaedlavyycqqysnypwtfgggtrleikrgg
ggsggggsggggsggggsevqlqqsgpevvktgasvkisckasgysftgyfinwvkknsg
kspewighisssyatstynqkfknkaaftvdtssstafmqlnsltsedsadyycvrsgny
eeyamdywgqgtsvtvsshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2gjjA (A:)
eadivltqtpsslpvsvgekvtmtckssqtllysnnqknylawyqqkpgqspklliswaf
trksgvpdrftgsgsgtdftltigsvkaedlavyycqqysnypwtfgggtrleikrgevq
lqqsgpevvktgasvkisckasgysftgyfinwvkknsgkspewighisssyatstynqk
fknkaaftvdtssstafmqlnsltsedsadyycvrsgnyeeyamdywgqgtsvtvs

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2gjjB (B:)
eaeadivltqtpsslpvsvgekvtmtckssqtllysnnqknylawyqqkpgqspkllisw
aftrksgvpdrftgsgsgtdftltigsvkaedlavyycqqysnypwtfgggtrleikrgg
ggsggggsggggsggggsevqlqqsgpevvktgasvkisckasgysftgyfinwvkknsg
kspewighisssyatstynqkfknkaaftvdtssstafmqlnsltsedsadyycvrsgny
eeyamdywgqgtsvtvsshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2gjjB (B:)
eadivltqtpsslpvsvgekvtmtckssqtllysnnqknylawyqqkpgqspklliswaf
trksgvpdrftgsgsgtdftltigsvkaedlavyycqqysnypwtfgggtrleikevqlq
qsgpevvktgasvkisckasgysftgyfinwvkknsgkspewighisssyatstynqkfk
nkaaftvdtssstafmqlnsltsedsadyycvrsgnyeeyamdywgqgtsvtvs