PDB entry 2gjd

View 2gjd on RCSB PDB site
Description: Distinct functional domains of Ubc9 dictate cell survival and resistance to genotoxic stress
Class: ligase
Keywords: Ubc9p, E2, Smt3, Saccharomyces Cerevisiae, crystallography, LIGASE
Deposited on 2006-03-30, released 2006-07-04
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 1.75 Å
R-factor: 0.21
AEROSPACI score: 0.51 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ubiquitin-conjugating enzyme E2-18 kDa
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: UBC9
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2gjda_
  • Chain 'B':
    Compound: Ubiquitin-conjugating enzyme E2-18 kDa
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: UBC9
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2gjdb_
  • Chain 'C':
    Compound: Ubiquitin-conjugating enzyme E2-18 kDa
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: UBC9
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2gjdc_
  • Chain 'D':
    Compound: Ubiquitin-conjugating enzyme E2-18 kDa
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: UBC9
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2gjdd_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2gjdA (A:)
    msslclqrlqeerkkwrkdhpfgfyakpvkkadgsmdlqkweagipgkegtnwaggvypi
    tveypneypskppkvkfpagfyhpnvypsgticlsilnedqdwrpaitlkqivlgvqdll
    dspnpnspaqepawrsfsrnkaeydkkvllqakqysk
    

    Sequence, based on observed residues (ATOM records): (download)
    >2gjdA (A:)
    slclqrlqeerkkwrkdhpfgfyakpvkkadgsmdlqkweagipgkegtnwaggvypitv
    eypneypskppkvkfpagfyhpnvypsgticlsilnedqdwrpaitlkqivlgvqdllds
    pnpnspaqepawrsfsrnkaeydkkvllqakqysk
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2gjdB (B:)
    msslclqrlqeerkkwrkdhpfgfyakpvkkadgsmdlqkweagipgkegtnwaggvypi
    tveypneypskppkvkfpagfyhpnvypsgticlsilnedqdwrpaitlkqivlgvqdll
    dspnpnspaqepawrsfsrnkaeydkkvllqakqysk
    

    Sequence, based on observed residues (ATOM records): (download)
    >2gjdB (B:)
    sslclqrlqeerkkwrkdhpfgfyakpvkkadgsmdlqkweagipgkegtnwaggvypit
    veypneypskppkvkfpagfyhpnvypsgticlsilnedqdwrpaitlkqivlgvqdlld
    spnpnspaqepawrsfsrnkaeydkkvllqakqysk
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >2gjdC (C:)
    msslclqrlqeerkkwrkdhpfgfyakpvkkadgsmdlqkweagipgkegtnwaggvypi
    tveypneypskppkvkfpagfyhpnvypsgticlsilnedqdwrpaitlkqivlgvqdll
    dspnpnspaqepawrsfsrnkaeydkkvllqakqysk
    

    Sequence, based on observed residues (ATOM records): (download)
    >2gjdC (C:)
    slclqrlqeerkkwrkdhpfgfyakpvkkadgsmdlqkweagipgkegtnwaggvypitv
    eypneypskppkvkfpagfyhpnvypsgticlsilnedqdwrpaitlkqivlgvqdllds
    pnpnspaqepawrsfsrnkaeydkkvllqakqysk
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >2gjdD (D:)
    msslclqrlqeerkkwrkdhpfgfyakpvkkadgsmdlqkweagipgkegtnwaggvypi
    tveypneypskppkvkfpagfyhpnvypsgticlsilnedqdwrpaitlkqivlgvqdll
    dspnpnspaqepawrsfsrnkaeydkkvllqakqysk
    

    Sequence, based on observed residues (ATOM records): (download)
    >2gjdD (D:)
    slclqrlqeerkkwrkdhpfgfyakpvkkadgsmdlqkweagipgkegtnwaggvypitv
    eypneypskppkvkfpagfyhpnvypsgticlsilnedqdwrpaitlkqivlgvqdllds
    pnpnspaqepawrsfsrnkaeydkkvllqakqysk