PDB entry 2gj8
View 2gj8 on RCSB PDB site
Description: Structure of the MnmE G-domain in complex with GDP*AlF4-, Mg2+ and K+
Class: Hydrolase
Keywords: G-domain dimer, alpha-beta-sandwich, Hydrolase
Deposited on
2006-03-30, released
2006-07-04
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: 0.208
AEROSPACI score: 0.5
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: tRNA modification GTPase trmE
Species: Escherichia coli BL21(DE3) [TaxId:469008]
Gene: trmE, mnmE, thdF
Database cross-references and differences (RAF-indexed):
- Uniprot P25522 (3-End)
- modified residue (4)
- modified residue (51)
- modified residue (89)
- modified residue (133)
- modified residue (163)
Domains in SCOPe 2.08: d2gj8a_ - Chain 'B':
Compound: tRNA modification GTPase trmE
Species: Escherichia coli BL21(DE3) [TaxId:469008]
Gene: trmE, mnmE, thdF
Database cross-references and differences (RAF-indexed):
- Uniprot P25522
- modified residue (4)
- modified residue (51)
- modified residue (89)
- modified residue (133)
- modified residue (163)
Domains in SCOPe 2.08: d2gj8b_ - Chain 'C':
Compound: tRNA modification GTPase trmE
Species: Escherichia coli BL21(DE3) [TaxId:469008]
Gene: trmE, mnmE, thdF
Database cross-references and differences (RAF-indexed):
- Uniprot P25522 (3-End)
- modified residue (4)
- modified residue (51)
- modified residue (89)
- modified residue (133)
- modified residue (163)
Domains in SCOPe 2.08: d2gj8c_ - Chain 'D':
Compound: tRNA modification GTPase trmE
Species: Escherichia coli BL21(DE3) [TaxId:469008]
Gene: trmE, mnmE, thdF
Database cross-references and differences (RAF-indexed):
- Uniprot P25522 (3-171)
- cloning artifact (0-2)
- modified residue (4)
- modified residue (51)
- modified residue (89)
- modified residue (133)
- modified residue (163)
- modified residue (169)
Domains in SCOPe 2.08: d2gj8d2, d2gj8d3 - Heterogens: ALF, MG, K, SE, GDP, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2gj8A (A:)
gshgmkvviagrpnagkssllnalagreaaivtdiagttrdvlrehihidgmplhiidta
glreasdeverigierawqeieqadrvlfmvdgtttdavdpaeiwpefiarlpaklpitv
vrnkaditgetlgmsevnghalirlsartgegvdvlrnhlkqsmgfdtnmeg
Sequence, based on observed residues (ATOM records): (download)
>2gj8A (A:)
gmkvviagrpnagkssllnalagreaaivtdiagttrdvlrehihidgmplhiidtaglr
easdeverigierawqeieqadrvlfmvdgtttdavdpaeiwpefiarlpaklpitvvrn
kaditgetlgmsevnghalirlsartgegvdvlrnhlkqsm
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2gj8B (B:)
gshgmkvviagrpnagkssllnalagreaaivtdiagttrdvlrehihidgmplhiidta
glreasdeverigierawqeieqadrvlfmvdgtttdavdpaeiwpefiarlpaklpitv
vrnkaditgetlgmsevnghalirlsartgegvdvlrnhlkqsmgfdtnmeg
Sequence, based on observed residues (ATOM records): (download)
>2gj8B (B:)
mkvviagrpnagkssllnalagreaaivtdiagttrdvlrehihidgmplhiidtaglre
asdeverigierawqeieqadrvlfmvdgtttdavdpaeiwpefiarlpaklpitvvrnk
aditgetlgmsevnghalirlsartgegvdvlrnhlkqsm
- Chain 'C':
Sequence, based on SEQRES records: (download)
>2gj8C (C:)
gshgmkvviagrpnagkssllnalagreaaivtdiagttrdvlrehihidgmplhiidta
glreasdeverigierawqeieqadrvlfmvdgtttdavdpaeiwpefiarlpaklpitv
vrnkaditgetlgmsevnghalirlsartgegvdvlrnhlkqsmgfdtnmeg
Sequence, based on observed residues (ATOM records): (download)
>2gj8C (C:)
gmkvviagrpnagkssllnalagreaaivtdiagttrdvlrehihidgmplhiidtaglr
easdeverigierawqeieqadrvlfmvdgtttdavdpaeiwpefiarlpaklpitvvrn
kaditgetlgmsevnghalirlsartgegvdvlrnhlkqsm
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>2gj8D (D:)
gshgmkvviagrpnagkssllnalagreaaivtdiagttrdvlrehihidgmplhiidta
glreasdeverigierawqeieqadrvlfmvdgtttdavdpaeiwpefiarlpaklpitv
vrnkaditgetlgmsevnghalirlsartgegvdvlrnhlkqsmgfdtnmeg