PDB entry 2git
View 2git on RCSB PDB site
Description: Human Class I MHC HLA-A2 in complex with the modified HTLV-1 TAX (Y5K-4-[3-Indolyl]-butyric acid) peptide
Class: immune system
Keywords: X-ray crystallography, HTLV-1 TAX peptide, haptenated peptide,
Lysine-4-(3-Indolyl)-butyric acid, MHC class I,HLA-A2
Deposited on
2006-03-29, released
2006-10-03
The last revision prior to the SCOP 1.75 freeze date was dated
2006-10-03, with a file datestamp of
2007-06-04.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: 0.182
AEROSPACI score: 0.66
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: HLA class I histocompatibility antigen, A-2 alpha chain
Species: HOMO SAPIENS
Gene: HLA-A, HLAA
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d2gita1, d2gita2 - Chain 'B':
Compound: Beta-2-microglobulin
Species: HOMO SAPIENS
Gene: B2M
Database cross-references and differences (RAF-indexed):
- Uniprot P61769 (1-99)
- initiating methionine (0)
Domains in SCOP 1.75: d2gitb1 - Chain 'C':
Compound: Transcriptional activator TAX
Species: synthetic, synthetic
- Chain 'D':
Compound: HLA class I histocompatibility antigen, A-2 alpha chain
Species: HOMO SAPIENS
Gene: HLA-A, HLAA
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d2gitd1, d2gitd2 - Chain 'E':
Compound: Beta-2-microglobulin
Species: HOMO SAPIENS
Gene: B2M
Database cross-references and differences (RAF-indexed):
- Uniprot P61769 (1-99)
- initiating methionine (0)
Domains in SCOP 1.75: d2gite1 - Chain 'F':
Compound: Transcriptional activator TAX
Species: synthetic, synthetic
- Heterogens: NA, GOL, FMT, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>2gitA (A:)
gshsmryfftsvsrpgrgeprfiavgyvddtqfvrfdsdaasqrmeprapwieqegpeyw
dgetrkvkahsqthrvdlgtlrgyynqseagshtvqrmygcdvgsdwrflrgyhqyaydg
kdyialkedlrswtaadmaaqttkhkweaahvaeqlraylegtcvewlrrylengketlq
rtdapkthmthhavsdheatlrcwalsfypaeitltwqrdgedqtqdtelvetrpagdgt
fqkwaavvvpsgqeqrytchvqheglpkpltlrwe
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>2gitB (B:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>2gitD (D:)
gshsmryfftsvsrpgrgeprfiavgyvddtqfvrfdsdaasqrmeprapwieqegpeyw
dgetrkvkahsqthrvdlgtlrgyynqseagshtvqrmygcdvgsdwrflrgyhqyaydg
kdyialkedlrswtaadmaaqttkhkweaahvaeqlraylegtcvewlrrylengketlq
rtdapkthmthhavsdheatlrcwalsfypaeitltwqrdgedqtqdtelvetrpagdgt
fqkwaavvvpsgqeqrytchvqheglpkpltlrwe
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>2gitE (E:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
- Chain 'F':
No sequence available.