PDB entry 2gic

View 2gic on RCSB PDB site
Description: Crystal Structure of a vesicular stomatitis virus nucleocapsid-RNA complex
Class: virus/viral protein/RNA
Keywords: nucleocapsid, protein-rna complex, negative strand virus
Deposited on 2006-03-28, released 2006-08-22
The last revision prior to the SCOP 1.73 freeze date was dated 2006-08-22, with a file datestamp of 2007-06-28.
Experiment type: XRAY
Resolution: 2.92 Å
R-factor: 0.258
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: nucleocapsid protein
    Species: Vesicular stomatitis Indiana virus
    Gene: N
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2gica1
  • Chain 'B':
    Compound: nucleocapsid protein
    Species: Vesicular stomatitis Indiana virus
    Gene: N
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2gicb1
  • Chain 'C':
    Compound: nucleocapsid protein
    Species: Vesicular stomatitis Indiana virus
    Gene: N
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2gicc1
  • Chain 'D':
    Compound: nucleocapsid protein
    Species: Vesicular stomatitis Indiana virus
    Gene: N
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2gicd1
  • Chain 'E':
    Compound: nucleocapsid protein
    Species: Vesicular stomatitis Indiana virus
    Gene: N
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2gice1
  • Chain 'R':
    Compound: 45-mer
  • Heterogens: IUM

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2gicA (A:)
msvtvkriidntvivpklpanedpveypadyfrkskeiplyinttkslsdlrgyvyqglk
sgnvsiihvnsylygalkdirgkldkdwssfginigkagdtigifdlvslkaldgvlpdg
vsdasrtsaddkwlplyllglyrvgrtqmpeyrkklmdgltnqckmineqfeplvpegrd
ifdvwgndsnytkivaavdmffhmfkkhecasfrygtivsrfkdcaalatfghlckitgm
stedvttwilnrevademvqmmlpgqeidkadsympylidfglsskspyssvknpafhfw
gqltalllrstrarnarqpddieytslttagllyayavgssadlaqqfcvgdnkytpdds
tgglttnappqgrdvvewlgwfedqnrkptpdmmqyakravmslqglrektigkyaksef
dk

    Sequence, based on observed residues (ATOM records): (download) 
    >2gicA (A:)
svtvkriidntvivpklpanedpveypadyfrkskeiplyinttkslsdlrgyvyqglks
gnvsiihvnsylygalkdirgkldkdwssfginigkagdtigifdlvslkaldgvlpdgv
sdasrtsaddkwlplyllglyrvgrtqmpeyrkklmdgltnqckmineqfeplvpegrdi
fdvwgndsnytkivaavdmffhmfkkhecasfrygtivsrfkdcaalatfghlckitgms
tedvttwilnrevademvqmmlpgqeidkadsympylidfglsskspyssvknpafhfwg
qltalllrstrarnarqpddieytslttagllyayavgssadlaqqfcvgdnkytpddst
gglttnappqgrdvvewlgwfedqnrkptpdmmqyakravmslqglrektigkyaksefd
k

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2gicB (B:)
msvtvkriidntvivpklpanedpveypadyfrkskeiplyinttkslsdlrgyvyqglk
sgnvsiihvnsylygalkdirgkldkdwssfginigkagdtigifdlvslkaldgvlpdg
vsdasrtsaddkwlplyllglyrvgrtqmpeyrkklmdgltnqckmineqfeplvpegrd
ifdvwgndsnytkivaavdmffhmfkkhecasfrygtivsrfkdcaalatfghlckitgm
stedvttwilnrevademvqmmlpgqeidkadsympylidfglsskspyssvknpafhfw
gqltalllrstrarnarqpddieytslttagllyayavgssadlaqqfcvgdnkytpdds
tgglttnappqgrdvvewlgwfedqnrkptpdmmqyakravmslqglrektigkyaksef
dk

    Sequence, based on observed residues (ATOM records): (download) 
    >2gicB (B:)
svtvkriidntvivpklpanedpveypadyfrkskeiplyinttkslsdlrgyvyqglks
gnvsiihvnsylygalkdirgkldkdwssfginigkagdtigifdlvslkaldgvlpdgv
sdasrtsaddkwlplyllglyrvgrtqmpeyrkklmdgltnqckmineqfeplvpegrdi
fdvwgndsnytkivaavdmffhmfkkhecasfrygtivsrfkdcaalatfghlckitgms
tedvttwilnrevademvqmmlpgqeidkadsympylidfglsskspyssvknpafhfwg
qltalllrstrarnarqpddieytslttagllyayavgssadlaqqfcvgdnkytpdttn
appqgrdvvewlgwfedqnrkptpdmmqyakravmslqglrektigkyaksefdk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2gicC (C:)
msvtvkriidntvivpklpanedpveypadyfrkskeiplyinttkslsdlrgyvyqglk
sgnvsiihvnsylygalkdirgkldkdwssfginigkagdtigifdlvslkaldgvlpdg
vsdasrtsaddkwlplyllglyrvgrtqmpeyrkklmdgltnqckmineqfeplvpegrd
ifdvwgndsnytkivaavdmffhmfkkhecasfrygtivsrfkdcaalatfghlckitgm
stedvttwilnrevademvqmmlpgqeidkadsympylidfglsskspyssvknpafhfw
gqltalllrstrarnarqpddieytslttagllyayavgssadlaqqfcvgdnkytpdds
tgglttnappqgrdvvewlgwfedqnrkptpdmmqyakravmslqglrektigkyaksef
dk

    Sequence, based on observed residues (ATOM records): (download) 
    >2gicC (C:)
svtvkriidntvivpklpanedpveypadyfrkskeiplyinttkslsdlrgyvyqglks
gnvsiihvnsylygalkdirgkldkdwssfginigkagdtigifdlvslkaldgvlpdgv
sdasrtsaddkwlplyllglyrvgrtqmpeyrkklmdgltnqckmineqfeplvpegrdi
fdvwgndsnytkivaavdmffhmfkkhecasfrygtivsrfkdcaalatfghlckitgms
tedvttwilnrevademvqmmlpgqeidkadsympylidfglsskspyssvknpafhfwg
qltalllrstrarnarqpddieytslttagllyayavgssadlaqqfcvgdnkytptnap
pqgrdvvewlgwfedqnrkptpdmmqyakravmslqglrektigkyaksefdk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2gicD (D:)
msvtvkriidntvivpklpanedpveypadyfrkskeiplyinttkslsdlrgyvyqglk
sgnvsiihvnsylygalkdirgkldkdwssfginigkagdtigifdlvslkaldgvlpdg
vsdasrtsaddkwlplyllglyrvgrtqmpeyrkklmdgltnqckmineqfeplvpegrd
ifdvwgndsnytkivaavdmffhmfkkhecasfrygtivsrfkdcaalatfghlckitgm
stedvttwilnrevademvqmmlpgqeidkadsympylidfglsskspyssvknpafhfw
gqltalllrstrarnarqpddieytslttagllyayavgssadlaqqfcvgdnkytpdds
tgglttnappqgrdvvewlgwfedqnrkptpdmmqyakravmslqglrektigkyaksef
dk

    Sequence, based on observed residues (ATOM records): (download) 
    >2gicD (D:)
svtvkriidntvivpklpanedpveypadyfrkskeiplyinttkslsdlrgyvyqglks
gnvsiihvnsylygalkdirgkldkdwssfginigkagdtigifdlvslkaldgvlpdgv
sdasrtsaddkwlplyllglyrvgrtqmpeyrkklmdgltnqckmineqfeplvpegrdi
fdvwgndsnytkivaavdmffhmfkkhecasfrygtivsrfkdcaalatfghlckitgms
tedvttwilnrevademvqmmlpgqeidkadsympylidfglsskspyssvknpafhfwg
qltalllrstrarnarqpddieytslttagllyayavgssadlaqqfcvgdnkytpdltt
nappqgrdvvewlgwfedqnrkptpdmmqyakravmslqglrektigkyaksefdk

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2gicE (E:)
msvtvkriidntvivpklpanedpveypadyfrkskeiplyinttkslsdlrgyvyqglk
sgnvsiihvnsylygalkdirgkldkdwssfginigkagdtigifdlvslkaldgvlpdg
vsdasrtsaddkwlplyllglyrvgrtqmpeyrkklmdgltnqckmineqfeplvpegrd
ifdvwgndsnytkivaavdmffhmfkkhecasfrygtivsrfkdcaalatfghlckitgm
stedvttwilnrevademvqmmlpgqeidkadsympylidfglsskspyssvknpafhfw
gqltalllrstrarnarqpddieytslttagllyayavgssadlaqqfcvgdnkytpdds
tgglttnappqgrdvvewlgwfedqnrkptpdmmqyakravmslqglrektigkyaksef
dk

    Sequence, based on observed residues (ATOM records): (download) 
    >2gicE (E:)
svtvkriidntvivpklpanedpveypadyfrkskeiplyinttkslsdlrgyvyqglks
gnvsiihvnsylygalkdirgkldkdwssfginigkagdtigifdlvslkaldgvlpdgv
sdasrtsaddkwlplyllglyrvgrtqmpeyrkklmdgltnqckmineqfeplvpegrdi
fdvwgndsnytkivaavdmffhmfkkhecasfrygtivsrfkdcaalatfghlckitgms
tedvttwilnrevademvqmmlpgqeidkadsympylidfglsskspyssvknpafhfwg
qltalllrstrarnarqpddieytslttagllyayavgssadlaqqfcvgdnkytpddst
gglttnappqgrdvvewlgwfedqnrkptpdmmqyakravmslqglrektigkyaksefd
k

  • Chain 'R':
    No sequence available.