PDB entry 2ge8

View 2ge8 on RCSB PDB site
Description: Structure of the C-terminal dimerization domain of infectious bronchitis virus nucleocapsid protein
Class: virus/viral protein/RNA binding protein
Keywords: Nucleocapsid protein, N protein, Coronavirus, IBV N protein, Dimerization domain
Deposited on 2006-03-18, released 2006-06-27
The last revision prior to the SCOP 1.75 freeze date was dated 2006-06-27, with a file datestamp of 2007-06-28.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.24
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: nucleocapsid protein
    Species: Infectious bronchitis virus
    Gene: N
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2ge8a1
  • Chain 'B':
    Compound: nucleocapsid protein
    Species: Infectious bronchitis virus
    Gene: N
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2ge8b1
  • Chain 'C':
    Compound: nucleocapsid protein
    Species: Infectious bronchitis virus
    Gene: N
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2ge8c1
  • Chain 'D':
    Compound: nucleocapsid protein
    Species: Infectious bronchitis virus
    Gene: N
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2ge8d1
  • Chain 'F':
    Compound: nucleocapsid protein
    Species: Infectious bronchitis virus
    Gene: N
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2ge8f1
  • Chain 'G':
    Compound: nucleocapsid protein
    Species: Infectious bronchitis virus
    Gene: N
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2ge8g1
  • Chain 'I':
    Compound: nucleocapsid protein
    Species: Infectious bronchitis virus
    Gene: N
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2ge8i1
  • Chain 'J':
    Compound: nucleocapsid protein
    Species: Infectious bronchitis virus
    Gene: N
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2ge8j1

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2ge8A (A:)
demahrryckrtippgykvdqvfgprtkgkegnfgddkmneegikdgrvtamlnlvpssh
aclfgsrvtpklqpdglhlkfefttvvprddpqfdnyvkicdqcvdgvgtrpkd

    Sequence, based on observed residues (ATOM records): (download) 
    >2ge8A (A:)
mahrryckrtippgykvdqvfgprtkgkegnfgddkmneegikdgrvtamlnlvpsshac
lfgsrvtpklqpdglhlkfefttvvprddpqfdnyvkicdqcvdgvgtrpkd

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2ge8B (B:)
demahrryckrtippgykvdqvfgprtkgkegnfgddkmneegikdgrvtamlnlvpssh
aclfgsrvtpklqpdglhlkfefttvvprddpqfdnyvkicdqcvdgvgtrpkd

    Sequence, based on observed residues (ATOM records): (download) 
    >2ge8B (B:)
rryckrtippgykvdqvfgprtkgkegnfgddkmneegikdgrvtamlnlvpsshaclfg
srvtpklqpdglhlkfefttvvprddpqfdnyvkicdqcvdgvgtrpkd

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2ge8C (C:)
demahrryckrtippgykvdqvfgprtkgkegnfgddkmneegikdgrvtamlnlvpssh
aclfgsrvtpklqpdglhlkfefttvvprddpqfdnyvkicdqcvdgvgtrpkd

    Sequence, based on observed residues (ATOM records): (download) 
    >2ge8C (C:)
rryckrtippgykvdqvfgprtkgkegnfgddkmneegikdgrvtamlnlvpsshaclfg
srvtpklqpdglhlkfefttvvprddpqfdnyvkicdqcvdgvgtrpkd

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2ge8D (D:)
demahrryckrtippgykvdqvfgprtkgkegnfgddkmneegikdgrvtamlnlvpssh
aclfgsrvtpklqpdglhlkfefttvvprddpqfdnyvkicdqcvdgvgtrpkd

    Sequence, based on observed residues (ATOM records): (download) 
    >2ge8D (D:)
ahrryckrtippgykvdqvfgprtkgkegnfgddkmneegikdgrvtamlnlvpsshacl
fgsrvtpklqpdglhlkfefttvvprddpqfdnyvkicdqcvdgvgtrpkd

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2ge8F (F:)
demahrryckrtippgykvdqvfgprtkgkegnfgddkmneegikdgrvtamlnlvpssh
aclfgsrvtpklqpdglhlkfefttvvprddpqfdnyvkicdqcvdgvgtrpkd

    Sequence, based on observed residues (ATOM records): (download) 
    >2ge8F (F:)
ryckrtippgykvdqvfgprtkgkegnfgddkmneegikdgrvtamlnlvpsshaclfgs
rvtpklqpdglhlkfefttvvprddpqfdnyvkicdqcvdgvgtrp

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >2ge8G (G:)
demahrryckrtippgykvdqvfgprtkgkegnfgddkmneegikdgrvtamlnlvpssh
aclfgsrvtpklqpdglhlkfefttvvprddpqfdnyvkicdqcvdgvgtrpkd

    Sequence, based on observed residues (ATOM records): (download) 
    >2ge8G (G:)
demahrryckrtippgykvdqvfgprtkgkegnfgddkmneegikdgrvtamlnlvpssh
aclfgsrvtpklqpdglhlkfefttvvprddpqfdnyvkicdqcvdgvgtrpk

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >2ge8I (I:)
demahrryckrtippgykvdqvfgprtkgkegnfgddkmneegikdgrvtamlnlvpssh
aclfgsrvtpklqpdglhlkfefttvvprddpqfdnyvkicdqcvdgvgtrpkd

    Sequence, based on observed residues (ATOM records): (download) 
    >2ge8I (I:)
rryckrtippgykvdqvfgprtkgkegnfgddkmneegikdgrvtamlnlvpsshaclfg
srvtpklqpdglhlkfefttvvprddpqfdnyvkicdqcvdgvgtrp

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >2ge8J (J:)
demahrryckrtippgykvdqvfgprtkgkegnfgddkmneegikdgrvtamlnlvpssh
aclfgsrvtpklqpdglhlkfefttvvprddpqfdnyvkicdqcvdgvgtrpkd

    Sequence, based on observed residues (ATOM records): (download) 
    >2ge8J (J:)
ryckrtippgykvdqvfgprtkgkegnfgddkmneegikdgrvtamlnlvpsshaclfgs
rvtpklqpdglhlkfefttvvprddpqfdnyvkicdqcvdgvgtrpkd