PDB entry 2gd1

View 2gd1 on RCSB PDB site
Description: coenzyme-induced conformational changes in glyceraldehyde-3-phosphate dehydrogenase from bacillus stearothermophillus
Class: oxidoreductase(aldehyde(d)-nad(a))
Keywords: oxidoreductase(aldehyde(d)-nad(a))
Deposited on 1989-06-29, released 1989-10-15
The last revision prior to the SCOPe 2.05 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.177
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'O':
    Compound: apo-d-glyceraldehyde-3-phosphate dehydrogenase
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d2gd1o1, d2gd1o2
  • Chain 'P':
    Compound: apo-d-glyceraldehyde-3-phosphate dehydrogenase
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d2gd1p1, d2gd1p2
  • Chain 'Q':
    Compound: apo-d-glyceraldehyde-3-phosphate dehydrogenase
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d2gd1q1, d2gd1q2
  • Chain 'R':
    Compound: apo-d-glyceraldehyde-3-phosphate dehydrogenase
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d2gd1r1, d2gd1r2
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'O':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2gd1O (O:)
avkvgingfgrigrnvfraalknpdievvavndltdantlahllkydsvhgrldaevsvn
gnnlvvngkeiivkaerdpenlawgeigvdivvestgrftkredaakhleagakkviisa
pakneditivmgvnqdkydpkahhvisnascttnclapfakvlheqfgivrgmmttvhsy
tndqrildlphkdlrraraaaesiiptttgaakavalvlpelkgklngmamrvptpnvsv
vdlvaelekevtveevnaalkaaaegelkgilayseeplvsrdyngstvsstidalstmv
idgkmvkvvswydnetgyshrvvdlaayiaskgl

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2gd1P (P:)
avkvgingfgrigrnvfraalknpdievvavndltdantlahllkydsvhgrldaevsvn
gnnlvvngkeiivkaerdpenlawgeigvdivvestgrftkredaakhleagakkviisa
pakneditivmgvnqdkydpkahhvisnascttnclapfakvlheqfgivrgmmttvhsy
tndqrildlphkdlrraraaaesiiptttgaakavalvlpelkgklngmamrvptpnvsv
vdlvaelekevtveevnaalkaaaegelkgilayseeplvsrdyngstvsstidalstmv
idgkmvkvvswydnetgyshrvvdlaayiaskgl

  • Chain 'Q':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2gd1Q (Q:)
avkvgingfgrigrnvfraalknpdievvavndltdantlahllkydsvhgrldaevsvn
gnnlvvngkeiivkaerdpenlawgeigvdivvestgrftkredaakhleagakkviisa
pakneditivmgvnqdkydpkahhvisnascttnclapfakvlheqfgivrgmmttvhsy
tndqrildlphkdlrraraaaesiiptttgaakavalvlpelkgklngmamrvptpnvsv
vdlvaelekevtveevnaalkaaaegelkgilayseeplvsrdyngstvsstidalstmv
idgkmvkvvswydnetgyshrvvdlaayiaskgl

  • Chain 'R':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2gd1R (R:)
avkvgingfgrigrnvfraalknpdievvavndltdantlahllkydsvhgrldaevsvn
gnnlvvngkeiivkaerdpenlawgeigvdivvestgrftkredaakhleagakkviisa
pakneditivmgvnqdkydpkahhvisnascttnclapfakvlheqfgivrgmmttvhsy
tndqrildlphkdlrraraaaesiiptttgaakavalvlpelkgklngmamrvptpnvsv
vdlvaelekevtveevnaalkaaaegelkgilayseeplvsrdyngstvsstidalstmv
idgkmvkvvswydnetgyshrvvdlaayiaskgl