PDB entry 2gaz
View 2gaz on RCSB PDB site
Description: Mycobacterial lipoglycan presentation by CD1d
Class: immune system
Keywords: mycobacteria, NKT cells, TCR, CD1, lipid antigen presentation
Deposited on
2006-03-09, released
2006-09-26
The last revision prior to the SCOP 1.73 freeze date was dated
2006-09-26, with a file datestamp of
2007-06-28.
Experiment type: XRAY
Resolution: 2.61 Å
R-factor: 0.216
AEROSPACI score: 0.28
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: T-cell surface glycoprotein CD1d1
Species: MUS MUSCULUS
Gene: Cd1d1, Cd1.1
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d2gaza1, d2gaza2 - Chain 'B':
Compound: Beta-2-microglobulin
Species: MUS MUSCULUS
Gene: B2M
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d2gazb1 - Heterogens: NAG, XPX, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2gazA (A:)
seaqqknytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsn
qqweklqhmfqvyrvsftrdiqelvkmmspkedypieiqlsagcemypgnasesflhvaf
qgkyvvrfwgtswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagk
sdlekqekpvawlssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpn
adetwylqatldveageeaglacrvkhsslggqdiilywhhhhhh
Sequence, based on observed residues (ATOM records): (download)
>2gazA (A:)
nytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsnqqwekl
qhmfqvyrvsftrdiqelvkmmdypieiqlsagcemypgnasesflhvafqgkyvvrfwg
tswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagksdlekqekpv
awlssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnadetwylqat
ldveageeaglacrvkhsslggqdiilyw
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2gazB (B:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhasmaepktvywdrdm
Sequence, based on observed residues (ATOM records): (download)
>2gazB (B:)
qktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdws
fyilahteftptetdtyacrvkhasmaepktvywdrdm