PDB entry 2gaz

View 2gaz on RCSB PDB site
Description: Mycobacterial lipoglycan presentation by CD1d
Class: immune system
Keywords: mycobacteria, NKT cells, TCR, CD1, lipid antigen presentation
Deposited on 2006-03-09, released 2006-09-26
The last revision prior to the SCOP 1.73 freeze date was dated 2006-09-26, with a file datestamp of 2007-06-28.
Experiment type: XRAY
Resolution: 2.61 Å
R-factor: 0.216
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: T-cell surface glycoprotein CD1d1
    Species: MUS MUSCULUS
    Gene: Cd1d1, Cd1.1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11609 (Start-278)
      • see remark 999 (200)
    Domains in SCOP 1.73: d2gaza1, d2gaza2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: MUS MUSCULUS
    Gene: B2M
    Database cross-references and differences (RAF-indexed):
    • GB AAH85164 (Start-98)
    Domains in SCOP 1.73: d2gazb1
  • Heterogens: NAG, XPX, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2gazA (A:)
    seaqqknytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsn
    qqweklqhmfqvyrvsftrdiqelvkmmspkedypieiqlsagcemypgnasesflhvaf
    qgkyvvrfwgtswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagk
    sdlekqekpvawlssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpn
    adetwylqatldveageeaglacrvkhsslggqdiilywhhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >2gazA (A:)
    nytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsnqqwekl
    qhmfqvyrvsftrdiqelvkmmdypieiqlsagcemypgnasesflhvafqgkyvvrfwg
    tswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagksdlekqekpv
    awlssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnadetwylqat
    ldveageeaglacrvkhsslggqdiilyw
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2gazB (B:)
    iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
    sfyilahteftptetdtyacrvkhasmaepktvywdrdm
    

    Sequence, based on observed residues (ATOM records): (download)
    >2gazB (B:)
    qktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdws
    fyilahteftptetdtyacrvkhasmaepktvywdrdm