PDB entry 2ga0

View 2ga0 on RCSB PDB site
Description: Variable Small Protein 1 of Borrelia turicatae (VspA or Vsp1)
Class: immune system
Keywords: helical bundle, Ni(II) binding sites, IMMUNE SYSTEM
Deposited on 2006-03-07, released 2006-06-27
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.219
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: surface protein VspA
    Species: Borrelia turicatae [TaxId:142]
    Gene: Vsp1, VspA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2ga0a_
  • Chain 'B':
    Compound: surface protein VspA
    Species: Borrelia turicatae [TaxId:142]
    Gene: Vsp1, VspA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2ga0b_
  • Chain 'C':
    Compound: surface protein VspA
    Species: Borrelia turicatae [TaxId:142]
    Gene: Vsp1, VspA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2ga0c_
  • Chain 'D':
    Compound: surface protein VspA
    Species: Borrelia turicatae [TaxId:142]
    Gene: Vsp1, VspA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2ga0d_
  • Chain 'E':
    Compound: surface protein VspA
    Species: Borrelia turicatae [TaxId:142]
    Gene: Vsp1, VspA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2ga0e_
  • Chain 'F':
    Compound: surface protein VspA
    Species: Borrelia turicatae [TaxId:142]
    Gene: Vsp1, VspA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2ga0f_
  • Chain 'G':
    Compound: surface protein VspA
    Species: Borrelia turicatae [TaxId:142]
    Gene: Vsp1, VspA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2ga0g_
  • Chain 'H':
    Compound: surface protein VspA
    Species: Borrelia turicatae [TaxId:142]
    Gene: Vsp1, VspA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2ga0h_
  • Heterogens: NI, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2ga0A (A:)
    sdgtvidlatitknitdavafaksvkdvhtlvksidelakaigkkigangletdadknak
    lisgaysvisavdtklaslekkvgisddlkgkittvknastsfltkaksktadlgkddvk
    dadaktaidiadtgakdkgaeeliklntaidalltsaeaavtaainalstpaksastvqs
    n
    

    Sequence, based on observed residues (ATOM records): (download)
    >2ga0A (A:)
    vidlatitknitdavafaksvkdvhtlvksidelakaigkkigangletdadknaklisg
    aysvisavdtklaslekkvgisddlkgkittvknastsfltkaksktadlgkddvkdada
    ktaidiadtgakdkgaeeliklntaidalltsaeaavtaainal
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2ga0B (B:)
    sdgtvidlatitknitdavafaksvkdvhtlvksidelakaigkkigangletdadknak
    lisgaysvisavdtklaslekkvgisddlkgkittvknastsfltkaksktadlgkddvk
    dadaktaidiadtgakdkgaeeliklntaidalltsaeaavtaainalstpaksastvqs
    n
    

    Sequence, based on observed residues (ATOM records): (download)
    >2ga0B (B:)
    vidlatitknitdavafaksvkdvhtlvksidelakaigkkigangletdadknaklisg
    aysvisavdtklaslekkvgisddlkgkittvknastsfltkaksktadlgkddvkdada
    ktaidiadtgakdkgaeeliklntaidalltsaeaavtaainal
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >2ga0C (C:)
    sdgtvidlatitknitdavafaksvkdvhtlvksidelakaigkkigangletdadknak
    lisgaysvisavdtklaslekkvgisddlkgkittvknastsfltkaksktadlgkddvk
    dadaktaidiadtgakdkgaeeliklntaidalltsaeaavtaainalstpaksastvqs
    n
    

    Sequence, based on observed residues (ATOM records): (download)
    >2ga0C (C:)
    vidlatitknitdavafaksvkdvhtlvksidelakaigkkigangletdadknaklisg
    aysvisavdtklaslekkvgisddlkgkittvknastsfltkaksktadlgkddvkdada
    ktaidiadtgakdkgaeeliklntaidalltsaeaavtaainal
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >2ga0D (D:)
    sdgtvidlatitknitdavafaksvkdvhtlvksidelakaigkkigangletdadknak
    lisgaysvisavdtklaslekkvgisddlkgkittvknastsfltkaksktadlgkddvk
    dadaktaidiadtgakdkgaeeliklntaidalltsaeaavtaainalstpaksastvqs
    n
    

    Sequence, based on observed residues (ATOM records): (download)
    >2ga0D (D:)
    vidlatitknitdavafaksvkdvhtlvksidelakaigkkigangletdadknaklisg
    aysvisavdtklaslekkvgisddlkgkittvknastsfltkaksktadlgkddvkdada
    ktaidiadtgakdkgaeeliklntaidalltsaeaavtaainal
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >2ga0E (E:)
    sdgtvidlatitknitdavafaksvkdvhtlvksidelakaigkkigangletdadknak
    lisgaysvisavdtklaslekkvgisddlkgkittvknastsfltkaksktadlgkddvk
    dadaktaidiadtgakdkgaeeliklntaidalltsaeaavtaainalstpaksastvqs
    n
    

    Sequence, based on observed residues (ATOM records): (download)
    >2ga0E (E:)
    vidlatitknitdavafaksvkdvhtlvksidelakaigkkigangletdadknaklisg
    aysvisavdtklaslekkvgisddlkgkittvknastsfltkaksktadlgkddvkdada
    ktaidiadtgakdkgaeeliklntaidalltsaeaavtaainal
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >2ga0F (F:)
    sdgtvidlatitknitdavafaksvkdvhtlvksidelakaigkkigangletdadknak
    lisgaysvisavdtklaslekkvgisddlkgkittvknastsfltkaksktadlgkddvk
    dadaktaidiadtgakdkgaeeliklntaidalltsaeaavtaainalstpaksastvqs
    n
    

    Sequence, based on observed residues (ATOM records): (download)
    >2ga0F (F:)
    vidlatitknitdavafaksvkdvhtlvksidelakaigkkigangletdadknaklisg
    aysvisavdtklaslekkvgisddlkgkittvknastsfltkaksktadlgkddvkdada
    ktaidiadtgakdkgaeeliklntaidalltsaeaavtaainal
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >2ga0G (G:)
    sdgtvidlatitknitdavafaksvkdvhtlvksidelakaigkkigangletdadknak
    lisgaysvisavdtklaslekkvgisddlkgkittvknastsfltkaksktadlgkddvk
    dadaktaidiadtgakdkgaeeliklntaidalltsaeaavtaainalstpaksastvqs
    n
    

    Sequence, based on observed residues (ATOM records): (download)
    >2ga0G (G:)
    vidlatitknitdavafaksvkdvhtlvksidelakaigkkigangletdadknaklisg
    aysvisavdtklaslekkvgisddlkgkittvknastsfltkaksktadlgkddvkdada
    ktaidiadtgakdkgaeeliklntaidalltsaeaavtaainal
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >2ga0H (H:)
    sdgtvidlatitknitdavafaksvkdvhtlvksidelakaigkkigangletdadknak
    lisgaysvisavdtklaslekkvgisddlkgkittvknastsfltkaksktadlgkddvk
    dadaktaidiadtgakdkgaeeliklntaidalltsaeaavtaainalstpaksastvqs
    n
    

    Sequence, based on observed residues (ATOM records): (download)
    >2ga0H (H:)
    vidlatitknitdavafaksvkdvhtlvksidelakaigkkigangletdadknaklisg
    aysvisavdtklaslekkvgisddlkgkittvknastsfltkaksktadlgkddvkdada
    ktaidiadtgakdkgaeeliklntaidalltsaeaavtaainal