PDB entry 2g6y
View 2g6y on RCSB PDB site
Description: Crystal structure of the novel green fluorescent protein from marine copepod Pontellina plumata
Class: luminescent protein
Keywords: green fluorescent protein, natural chromophore, rapid maturation, beta-can, LUMINESCENT PROTEIN
Deposited on
2006-02-26, released
2006-03-28
The last revision prior to the SCOPe 2.03 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-08.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: 0.162
AEROSPACI score: 0.61
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: green fluorescent protein 2
Species: Pontellina plumata [TaxId:239963]
Gene: ppluGFP2
Database cross-references and differences (RAF-indexed):
- GB AAQ01184
- engineered (4)
- chromophore (57)
- engineered (116)
- engineered (148)
- engineered (150)
- engineered (154)
- engineered (167)
- engineered (199)
Domains in SCOPe 2.03: d2g6ya_ - Chain 'B':
Compound: green fluorescent protein 2
Species: Pontellina plumata [TaxId:239963]
Gene: ppluGFP2
Database cross-references and differences (RAF-indexed):
- GB AAQ01184 (1-End)
- cloning artifact (0)
- engineered (4)
- chromophore (57)
- engineered (116)
- engineered (148)
- engineered (150)
- engineered (154)
- engineered (167)
- engineered (199)
Domains in SCOPe 2.03: d2g6yb_ - Chain 'C':
Compound: green fluorescent protein 2
Species: Pontellina plumata [TaxId:239963]
Gene: ppluGFP2
Database cross-references and differences (RAF-indexed):
- GB AAQ01184 (1-218)
- engineered (4)
- chromophore (57)
- engineered (116)
- engineered (148)
- engineered (150)
- engineered (154)
- engineered (167)
- engineered (199)
- engineered (218)
Domains in SCOPe 2.03: d2g6yc_ - Chain 'D':
Compound: green fluorescent protein 2
Species: Pontellina plumata [TaxId:239963]
Gene: ppluGFP2
Database cross-references and differences (RAF-indexed):
- GB AAQ01184 (Start-218)
- engineered (4)
- chromophore (57)
- engineered (116)
- engineered (148)
- engineered (150)
- engineered (154)
- engineered (167)
- engineered (199)
- engineered (218)
Domains in SCOPe 2.03: d2g6yd_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2g6yA (A:)
lpameiecritgtlngvefelvgggegtpeqgrmtnkmkstkgaltfspyllshvmgygf
yhfgtypsgyenpflhainnggytntriekyedggvlhvsfsyryeagrvigdfkvmgtg
fpedsviftdkiirsnatvehlhpmgdndldgsftrtfslrdggyyssvvdshmhfksai
hpsilqnggpmfafrrveedhsntelgiveyqhafktpd
Sequence, based on observed residues (ATOM records): (download)
>2g6yA (A:)
ameiecritgtlngvefelvgggegtpeqgrmtnkmkstkgaltfspyllshvmgygfyh
fgtypsgyenpflhainnggytntriekyedggvlhvsfsyryeagrvigdfkvmgtgfp
edsviftdkiirsnatvehlhpmgdndldgsftrtfslrdggyyssvvdshmhfksaihp
silqnggpmfafrrveedhsntelgiveyqhafktp
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2g6yB (B:)
lpameiecritgtlngvefelvgggegtpeqgrmtnkmkstkgaltfspyllshvmgygf
yhfgtypsgyenpflhainnggytntriekyedggvlhvsfsyryeagrvigdfkvmgtg
fpedsviftdkiirsnatvehlhpmgdndldgsftrtfslrdggyyssvvdshmhfksai
hpsilqnggpmfafrrveedhsntelgiveyqhafktpd
Sequence, based on observed residues (ATOM records): (download)
>2g6yB (B:)
lpameiecritgtlngvefelvgggegtpeqgrmtnkmkstkgaltfspyllshvmgygf
yhfgtypsgyenpflhainnggytntriekyedggvlhvsfsyryeagrvigdfkvmgtg
fpedsviftdkiirsnatvehlhpmgdndldgsftrtfslrdggyyssvvdshmhfksai
hpsilqnggpmfafrrveedhsntelgiveyqhafktp
- Chain 'C':
Sequence, based on SEQRES records: (download)
>2g6yC (C:)
lpameiecritgtlngvefelvgggegtpeqgrmtnkmkstkgaltfspyllshvmgygf
yhfgtypsgyenpflhainnggytntriekyedggvlhvsfsyryeagrvigdfkvmgtg
fpedsviftdkiirsnatvehlhpmgdndldgsftrtfslrdggyyssvvdshmhfksai
hpsilqnggpmfafrrveedhsntelgiveyqhafktpd
Sequence, based on observed residues (ATOM records): (download)
>2g6yC (C:)
pameiecritgtlngvefelvgggegtpeqgrmtnkmkstkgaltfspyllshvmgygfy
hfgtypsgyenpflhainnggytntriekyedggvlhvsfsyryeagrvigdfkvmgtgf
pedsviftdkiirsnatvehlhpmgdndldgsftrtfslrdggyyssvvdshmhfksaih
psilqnggpmfafrrveedhsntelgiveyqhafktpd
- Chain 'D':
Sequence, based on SEQRES records: (download)
>2g6yD (D:)
lpameiecritgtlngvefelvgggegtpeqgrmtnkmkstkgaltfspyllshvmgygf
yhfgtypsgyenpflhainnggytntriekyedggvlhvsfsyryeagrvigdfkvmgtg
fpedsviftdkiirsnatvehlhpmgdndldgsftrtfslrdggyyssvvdshmhfksai
hpsilqnggpmfafrrveedhsntelgiveyqhafktpd
Sequence, based on observed residues (ATOM records): (download)
>2g6yD (D:)
ameiecritgtlngvefelvgggegtpeqgrmtnkmkstkgaltfspyllshvmgygfyh
fgtypsgyenpflhainnggytntriekyedggvlhvsfsyryeagrvigdfkvmgtgfp
edsviftdkiirsnatvehlhpmgdndldgsftrtfslrdggyyssvvdshmhfksaihp
silqnggpmfafrrveedhsntelgiveyqhafktpd