PDB entry 2fyd

View 2fyd on RCSB PDB site
Description: catalytic domain of bovine beta 1, 4-galactosyltransferase in complex with alpha-lactalbumin, glucose, Mn, and UDP-N-acetylgalactosamine
Class: transferase
Keywords: lactose sythase, catalytic intermediate
Deposited on 2006-02-07, released 2006-03-14
The last revision prior to the SCOP 1.73 freeze date was dated 2006-04-11, with a file datestamp of 2007-07-20.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.201
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: alpha-lactalbumin
    Species: MUS MUSCULUS
    Gene: Lalba
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2fyda1
  • Chain 'B':
    Compound: beta-1,4-galactosyltransferase
    Species: BOS TAURUS
    Database cross-references and differences (RAF-indexed):
    • GB AAM54035 (Start-285)
      • engineered (195)
      • engineered (225)
      • engineered (284)
    Domains in SCOP 1.73: d2fydb1
  • Chain 'C':
    Compound: alpha-lactalbumin
    Species: MUS MUSCULUS
    Gene: Lalba
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2fydc1
  • Chain 'D':
    Compound: beta-1,4-galactosyltransferase
    Species: BOS TAURUS
    Database cross-references and differences (RAF-indexed):
    • GB AAM54035 (Start-285)
      • engineered (195)
      • engineered (225)
      • engineered (284)
    Domains in SCOP 1.73: d2fydd1
  • Heterogens: GLC, NGA, CA, MN, UDP, PG4, MES, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2fydA (A:)
teltkckvshaikdidgyqgisllewacvlfhtsgydtqavvndngsteyglfqisdrfw
ckssefpesenicgiscdkllddeldddiacakkilaikgidywkaykpmcsekleqwrc
ekp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2fydB (B:)
asmtggqqmgrgssltacpeespllvgpmliefnipvdlklveqqnpkvklggrytpmdc
isphkvaiiipfrnrqehlkywlyylhpilqrqqldygiyvinqagesmfnrakllnvgf
kealkdydyncfvfsdvdlipmndhntyrcfsqprhisvamdkfgfslpyvqyfggvsal
skqqflsingfpnnycgwggedddiynrlafrgmsvsrpnavigktrmirhsrdkknepn
pqrfdriahtketmlsdglnsltymvlevqryplytkitvdigtcs

    Sequence, based on observed residues (ATOM records): (download) 
    >2fydB (B:)
ltacpeespllvgpmliefnipvdlklveqqnpkvklggrytpmdcisphkvaiiipfrn
rqehlkywlyylhpilqrqqldygiyvinqagesmfnrakllnvgfkealkdydyncfvf
sdvdlipmndhntyrcfsqprhisvamdkfgfslpyvqyfggvsalskqqflsingfpnn
ycgwggedddiynrlafrgmsvsrpnavigktrmirhsrdkknepnpqrfdriahtketm
lsdglnsltymvlevqryplytkitvdigtcs

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2fydC (C:)
teltkckvshaikdidgyqgisllewacvlfhtsgydtqavvndngsteyglfqisdrfw
ckssefpesenicgiscdkllddeldddiacakkilaikgidywkaykpmcsekleqwrc
ekp

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2fydD (D:)
asmtggqqmgrgssltacpeespllvgpmliefnipvdlklveqqnpkvklggrytpmdc
isphkvaiiipfrnrqehlkywlyylhpilqrqqldygiyvinqagesmfnrakllnvgf
kealkdydyncfvfsdvdlipmndhntyrcfsqprhisvamdkfgfslpyvqyfggvsal
skqqflsingfpnnycgwggedddiynrlafrgmsvsrpnavigktrmirhsrdkknepn
pqrfdriahtketmlsdglnsltymvlevqryplytkitvdigtcs

    Sequence, based on observed residues (ATOM records): (download) 
    >2fydD (D:)
ltacpeespllvgpmliefnipvdlklveqqnpkvklggrytpmdcisphkvaiiipfrn
rqehlkywlyylhpilqrqqldygiyvinqagesmfnrakllnvgfkealkdydyncfvf
sdvdlipmndhntyrcfsqprhisvamdkfgfslpyvqyfggvsalskqqflsingfpnn
ycgwggedddiynrlafrgmsvsrpnavigktrmirhsrdkknepnpqrfdriahtketm
lsdglnsltymvlevqryplytkitvdigtcs