PDB entry 2fif

View 2fif on RCSB PDB site
Description: Crystal Structure of a Bovine Rabex-5 fragment complexed with ubiquitin
Class: protein turnover/endocytosis
Keywords: zinc finger, helix, PROTEIN TURNOVER-ENDOCYTOSIS COMPLEX
Deposited on 2005-12-29, released 2006-02-07
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.49 Å
R-factor: 0.23
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ubiquitin
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2fifa_
  • Chain 'B':
    Compound: Rab5 GDP/GTP exchange factor
    Species: Bos taurus [TaxId:9913]
    Gene: RABGEF1, RABEX5
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2fifb_
  • Chain 'C':
    Compound: Ubiquitin
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2fifc_
  • Chain 'D':
    Compound: Rab5 GDP/GTP exchange factor
    Species: Bos taurus [TaxId:9913]
    Gene: RABGEF1, RABEX5
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2fifd_
  • Chain 'E':
    Compound: Ubiquitin
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2fife_
  • Chain 'F':
    Compound: Rab5 GDP/GTP exchange factor
    Species: Bos taurus [TaxId:9913]
    Gene: RABGEF1, RABEX5
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2fiff_
  • Heterogens: ZN, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2fifA (A:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >2fifA (A:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrl
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2fifB (B:)
    gamgsgihvdqsellckkgcgyygnpawqgfcskcwreeyhkarqkqiqedwelaerlqr
    eeeeafassq
    

    Sequence, based on observed residues (ATOM records): (download)
    >2fifB (B:)
    sellckkgcgyygnpawqgfcskcwreeyhkarqkqiqedwelaerlqreeeeafassq
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >2fifC (C:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >2fifC (C:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrl
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >2fifD (D:)
    gamgsgihvdqsellckkgcgyygnpawqgfcskcwreeyhkarqkqiqedwelaerlqr
    eeeeafassq
    

    Sequence, based on observed residues (ATOM records): (download)
    >2fifD (D:)
    ellckkgcgyygnpawqgfcskcwreeyhkarqkqiqedwelaerlqreeeeafassq
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >2fifE (E:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >2fifE (E:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrl
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >2fifF (F:)
    gamgsgihvdqsellckkgcgyygnpawqgfcskcwreeyhkarqkqiqedwelaerlqr
    eeeeafassq
    

    Sequence, based on observed residues (ATOM records): (download)
    >2fifF (F:)
    llckkgcgyygnpawqgfcskcwreeyhkarqkqiqedwelaerlqreeeeafass