PDB entry 2fif
View 2fif on RCSB PDB site
Description: Crystal Structure of a Bovine Rabex-5 fragment complexed with ubiquitin
Class: protein turnover/endocytosis
Keywords: zinc finger, helix, PROTEIN TURNOVER-ENDOCYTOSIS COMPLEX
Deposited on
2005-12-29, released
2006-02-07
The last revision prior to the SCOPe 2.08 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-08.
Experiment type: XRAY
Resolution: 2.49 Å
R-factor: 0.23
AEROSPACI score: 0.3
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Ubiquitin
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2fifa_ - Chain 'B':
Compound: Rab5 GDP/GTP exchange factor
Species: Bos taurus [TaxId:9913]
Gene: RABGEF1, RABEX5
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2fifb_ - Chain 'C':
Compound: Ubiquitin
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2fifc_ - Chain 'D':
Compound: Rab5 GDP/GTP exchange factor
Species: Bos taurus [TaxId:9913]
Gene: RABGEF1, RABEX5
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2fifd_ - Chain 'E':
Compound: Ubiquitin
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2fife_ - Chain 'F':
Compound: Rab5 GDP/GTP exchange factor
Species: Bos taurus [TaxId:9913]
Gene: RABGEF1, RABEX5
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2fiff_ - Heterogens: ZN, SO4, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2fifA (A:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgg
Sequence, based on observed residues (ATOM records): (download)
>2fifA (A:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrl
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2fifB (B:)
gamgsgihvdqsellckkgcgyygnpawqgfcskcwreeyhkarqkqiqedwelaerlqr
eeeeafassq
Sequence, based on observed residues (ATOM records): (download)
>2fifB (B:)
sellckkgcgyygnpawqgfcskcwreeyhkarqkqiqedwelaerlqreeeeafassq
- Chain 'C':
Sequence, based on SEQRES records: (download)
>2fifC (C:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgg
Sequence, based on observed residues (ATOM records): (download)
>2fifC (C:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrl
- Chain 'D':
Sequence, based on SEQRES records: (download)
>2fifD (D:)
gamgsgihvdqsellckkgcgyygnpawqgfcskcwreeyhkarqkqiqedwelaerlqr
eeeeafassq
Sequence, based on observed residues (ATOM records): (download)
>2fifD (D:)
ellckkgcgyygnpawqgfcskcwreeyhkarqkqiqedwelaerlqreeeeafassq
- Chain 'E':
Sequence, based on SEQRES records: (download)
>2fifE (E:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgg
Sequence, based on observed residues (ATOM records): (download)
>2fifE (E:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrl
- Chain 'F':
Sequence, based on SEQRES records: (download)
>2fifF (F:)
gamgsgihvdqsellckkgcgyygnpawqgfcskcwreeyhkarqkqiqedwelaerlqr
eeeeafassq
Sequence, based on observed residues (ATOM records): (download)
>2fifF (F:)
llckkgcgyygnpawqgfcskcwreeyhkarqkqiqedwelaerlqreeeeafass