PDB entry 2fid
View 2fid on RCSB PDB site
Description: Crystal Structure of a Bovine Rabex-5 fragment complexed with ubiquitin
Class: protein turnover/endocytosis
Keywords: zinc finger, helix, PROTEIN TURNOVER-ENDOCYTOSIS COMPLEX
Deposited on
2005-12-29, released
2006-02-07
The last revision prior to the SCOPe 2.04 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-08.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.217
AEROSPACI score: 0.27
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Ubiquitin
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d2fida_ - Chain 'B':
Compound: Rab5 GDP/GTP exchange factor
Species: Bos taurus [TaxId:9913]
Gene: RABGEF1, RABEX5
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d2fidb1 - Heterogens: ZN, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2fidA (A:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgg
Sequence, based on observed residues (ATOM records): (download)
>2fidA (A:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrl
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2fidB (B:)
gamgsgihvdqsellckkgcgyygnpawqgfcskcwreeyhkarqkqiqedwelaerlqr
eeeeafassq
Sequence, based on observed residues (ATOM records): (download)
>2fidB (B:)
qsellckkgcgyygnpawqgfcskcwreeyhkarqkqiqedwelaerlqreeeeafassq