PDB entry 2fid

View 2fid on RCSB PDB site
Description: Crystal Structure of a Bovine Rabex-5 fragment complexed with ubiquitin
Class: protein turnover/endocytosis
Keywords: zinc finger, helix, PROTEIN TURNOVER-ENDOCYTOSIS COMPLEX
Deposited on 2005-12-29, released 2006-02-07
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.217
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ubiquitin
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2fida_
  • Chain 'B':
    Compound: Rab5 GDP/GTP exchange factor
    Species: Bos taurus [TaxId:9913]
    Gene: RABGEF1, RABEX5
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2fidb1
  • Heterogens: ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2fidA (A:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >2fidA (A:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrl
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2fidB (B:)
    gamgsgihvdqsellckkgcgyygnpawqgfcskcwreeyhkarqkqiqedwelaerlqr
    eeeeafassq
    

    Sequence, based on observed residues (ATOM records): (download)
    >2fidB (B:)
    qsellckkgcgyygnpawqgfcskcwreeyhkarqkqiqedwelaerlqreeeeafassq