PDB entry 2fdk

View 2fdk on RCSB PDB site
Description: Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T (air 9 days)
Class: oxidoreductase/DNA
Keywords: beta jellyroll, Structural Genomics, PSI, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, OXIDOREDUCTASE-DNA COMPLEX
Deposited on 2005-12-14, released 2006-02-21
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.171
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Alkylated DNA repair protein alkB
    Species: Escherichia coli [TaxId:83333]
    Gene: alkB, aidD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2fdka_
  • Chain 'B':
    Compound: 5'-d(p*tp*(ma7)p*t)-3'
  • Heterogens: FE2, AKG, SIN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2fdkA (A:)
mqeplaagavilrrfafnaaeqlirdindvasqspfrqmvtpggytmsvamtncghlgwt
thrqgylyspidpqtnkpwpampqsfhnlcqraataagypdfqpdaclinryapgaklsl
hqdkdepdlrapivsvslglpaifqfgglkrndplkrlllehgdvvvwggesrlfyhgiq
plkagfhpltidcrynltfrqagkkenlyfq

    Sequence, based on observed residues (ATOM records): (download) 
    >2fdkA (A:)
aagavilrrfafnaaeqlirdindvasqspfrqmvtpggytmsvamtncghlgwtthrqg
ylyspidpqtnkpwpampqsfhnlcqraataagypdfqpdaclinryapgaklslhqdkd
epdlrapivsvslglpaifqfgglkrndplkrlllehgdvvvwggesrlfyhgiqplkag
fhpltidcrynltfrqagk

  • Chain 'B':
    No sequence available.