PDB entry 2fdi
View 2fdi on RCSB PDB site
Description: Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T (air 3 hours)
Class: oxidoreductase/DNA
Keywords: beta jellyroll, Structural Genomics, PSI, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, OXIDOREDUCTASE-DNA COMPLEX
Deposited on
2005-12-14, released
2006-02-21
The last revision prior to the SCOPe 2.06 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-25.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.195
AEROSPACI score: 0.51
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Alkylated DNA repair protein alkB
Species: Escherichia coli [TaxId:83333]
Gene: alkB, aidD
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d2fdia_ - Chain 'B':
Compound: 5'-d(p*tp*(ma7)p*t)-3'
- Heterogens: FE2, AKG, SIN, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2fdiA (A:)
mqeplaagavilrrfafnaaeqlirdindvasqspfrqmvtpggytmsvamtncghlgwt
thrqgylyspidpqtnkpwpampqsfhnlcqraataagypdfqpdaclinryapgaklsl
hqdkdepdlrapivsvslglpaifqfgglkrndplkrlllehgdvvvwggesrlfyhgiq
plkagfhpltidcrynltfrqagkkenlyfq
Sequence, based on observed residues (ATOM records): (download)
>2fdiA (A:)
laagavilrrfafnaaeqlirdindvasqspfrqmvtpggytmsvamtncghlgwtthrq
gylyspidpqtnkpwpampqsfhnlcqraataagypdfqpdaclinryapgaklslhqdk
depdlrapivsvslglpaifqfgglkrndplkrlllehgdvvvwggesrlfyhgiqplka
gfhpltidcrynltfrqagk
- Chain 'B':
No sequence available.