PDB entry 2fdh

View 2fdh on RCSB PDB site
Description: Crystal Structure of AlkB in complex with Mn(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T
Class: oxidoreductase/DNA
Keywords: beta jellyroll, Structural Genomics, PSI, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG
Deposited on 2005-12-14, released 2006-02-21
The last revision prior to the SCOP 1.75 freeze date was dated 2006-02-21, with a file datestamp of 2007-06-28.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.187
AEROSPACI score: 0.53 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Alkylated DNA repair protein alkB
    Species: Escherichia coli
    Gene: alkB, aidD
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2fdha1
  • Chain 'B':
    Compound: 5'-d(p*tp*(ma7)p*t)-3'
  • Heterogens: MN, AKG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2fdhA (A:)
    mqeplaagavilrrfafnaaeqlirdindvasqspfrqmvtpggytmsvamtncghlgwt
    thrqgylyspidpqtnkpwpampqsfhnlcqraataagypdfqpdaclinryapgaklsl
    hqdkdepdlrapivsvslglpaifqfgglkrndplkrlllehgdvvvwggesrlfyhgiq
    plkagfhpltidcrynltfrqagkkenlyfq
    

    Sequence, based on observed residues (ATOM records): (download)
    >2fdhA (A:)
    laagavilrrfafnaaeqlirdindvasqspfrqmvtpggytmsvamtncghlgwtthrq
    gylyspidpqtnkpwpampqsfhnlcqraataagypdfqpdaclinryapgaklslhqdk
    depdlrapivsvslglpaifqfgglkrndplkrlllehgdvvvwggesrlfyhgiqplka
    gfhpltidcrynltfrqagk
    

  • Chain 'B':
    No sequence available.