PDB entry 2f62

View 2f62 on RCSB PDB site
Description: Crystal structure of Nucleoside 2-deoxyribosyltransferase from Trypanosoma brucei at 1.5 A resolution with (2-ETHYLPHENYL)METHANOL bound
Class: transferase
Keywords: SGPP, Structural GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE NDRT, Nucleoside 2-deoxyribosyltransferase, Trypanosoma brucei, Structural Genomics of Pathogenic Protozoa Consortium, TRANSFERASE
Deposited on 2005-11-28, released 2005-12-06
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.5 Å
R-factor: 0.168
AEROSPACI score: 0.66 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: nucleoside 2-deoxyribosyltransferase
    Species: Trypanosoma brucei [TaxId:5691]
    Gene: Tb05.30H13.400
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q57VC7 (8-End)
      • expression tag (2-7)
      • modified residue (8)
      • modified residue (23)
      • modified residue (41)
      • see remark 999 (52)
      • modified residue (63)
      • see remark 999 (92)
      • modified residue (99)
      • modified residue (110)
      • see remark 999 (117)
      • modified residue (135)
    Domains in SCOPe 2.06: d2f62a2, d2f62a3
  • Chain 'B':
    Compound: nucleoside 2-deoxyribosyltransferase
    Species: Trypanosoma brucei [TaxId:5691]
    Gene: Tb05.30H13.400
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q57VC7 (8-End)
      • expression tag (2-7)
      • modified residue (8)
      • modified residue (23)
      • modified residue (41)
      • see remark 999 (52)
      • modified residue (63)
      • see remark 999 (92)
      • modified residue (99)
      • modified residue (110)
      • see remark 999 (117)
      • modified residue (135)
    Domains in SCOPe 2.06: d2f62b2, d2f62b3
  • Heterogens: SO4, 12M, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2f62A (A:)
mahhhhhhmrkiyiagpavfnpdmgasyynkvrellkkenvmpliptdneatealdirqk
niqmikdcdaviadlspfrghepdcgtafevgcaaalnkmvltftsdrrnmrekygsgvd
kdnlrvegfglpfnlmlydgvevfdsfesafkyflanfpsk

    Sequence, based on observed residues (ATOM records): (download) 
    >2f62A (A:)
hhhhhhmrkiyiagpavfnpdmgasyynkvrellkkenvmpliptdneatealdirqkni
qmikdcdaviadlspfrghepdcgtafevgcaaalnkmvltftsdrrnmrekygsgvdkd
nlrvegfglpfnlmlydgvevfdsfesafkyflanfps

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2f62B (B:)
mahhhhhhmrkiyiagpavfnpdmgasyynkvrellkkenvmpliptdneatealdirqk
niqmikdcdaviadlspfrghepdcgtafevgcaaalnkmvltftsdrrnmrekygsgvd
kdnlrvegfglpfnlmlydgvevfdsfesafkyflanfpsk

    Sequence, based on observed residues (ATOM records): (download) 
    >2f62B (B:)
hhhhhhmrkiyiagpavfnpdmgasyynkvrellkkenvmpliptdneatealdirqkni
qmikdcdaviadlspfrghepdcgtafevgcaaalnkmvltftsdrrnmrekygsgvdkd
nlrvegfglpfnlmlydgvevfdsfesafkyflanfps