PDB entry 2f5s
View 2f5s on RCSB PDB site
Description: Catalytically inactive (E3Q) MutM crosslinked to oxoG:C containing DNA CC1
Class: hydrolase/DNA
Keywords: disulfide crosslink, DNA glycosylase, DNA repair, damage search, control complex
Deposited on
2005-11-26, released
2006-03-07
The last revision prior to the SCOP 1.75 freeze date was dated
2006-03-07, with a file datestamp of
2007-06-04.
Experiment type: XRAY
Resolution: 2.35 Å
R-factor: 0.22
AEROSPACI score: 0.41
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: formamidopyrimidine-DNA glycosidase
Species: Bacillus stearothermophilus
Database cross-references and differences (RAF-indexed):
- Uniprot P84131 (Start-273)
- engineered (2)
- engineered (165)
Domains in SCOP 1.75: d2f5sa1, d2f5sa2, d2f5sa3 - Chain 'B':
Compound: 5'-d(*ap*gp*gp*tp*ap*gp*ap*cp*tp*cp*gp*gp*ap*cp*gp*c)-3'
- Chain 'C':
Compound: 5'-d(*tp*gp*c*gp*tp*cp*cp*(8og)p*ap*gp*tp*cp*tp*ap*cp*c)-3'
Species: synthetic, synthetic
- Heterogens: ZN, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2f5sA (A:)
mpqlpevetirrtllplivgktiedvrifwpniirhprdseafaarmigqtvrglerrgk
flkflldrdalishlrmegryavasaleplephthvvfcftdgselryrdvrkfgtmhvy
akeeadrrpplaelgpeplspafspavlaeravktkrsvkallldctvvagfgniyvdes
lfragilpgrpaaslsskeierlheemvatigeavmkggstvrtyvntqgeagtfqhhly
vygrqgnpckrcgtpiektvvagrgthycprcqr
Sequence, based on observed residues (ATOM records): (download)
>2f5sA (A:)
pqlpevetirrtllplivgktiedvrifwpniirhprdseafaarmigqtvrglerrgkf
lkflldrdalishlrmegryavasaleplephthvvfcftdgselryrdvrkfgtmhvya
keeadrrpplaelgpeplspafspavlaeravktkrsvkallldctvvagfgniyvdesl
fragilpgrpaaslsskeierlheemvatigeavmkggstvrtyvntqgeagtfqhhlyv
ygrqgnpckrcgtpiektvvagrgthycprcqr
- Chain 'B':
No sequence available.
- Chain 'C':
No sequence available.