PDB entry 2eq9

View 2eq9 on RCSB PDB site
Description: Crystal structure of lipoamide dehydrogenase from thermus thermophilus HB8 with psbdb
Class: oxidoreductase
Keywords: PROTEIN-PROTEIN COMPLEX, OXIDOREDUCTASE, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI
Deposited on 2007-03-30, released 2008-04-01
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.09 Å
R-factor: 0.217
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component
  Species: Thermus thermophilus [TaxId:300852]
  Gene: TTHA0233
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q5SLR0
• Chain 'B':
  Compound: Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component
  Species: Thermus thermophilus [TaxId:300852]
  Gene: TTHA0233
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q5SLR0
• Chain 'C':
  Compound: Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component
  Species: Thermus thermophilus [TaxId:300852]
  Gene: TTHA0232
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q5SLR1 (1-End)
    • initiating methionine (0)
  Domains in SCOPe 2.06: d2eq9c_
• Chain 'D':
  Compound: Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component
  Species: Thermus thermophilus [TaxId:300852]
  Gene: TTHA0233
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q5SLR0
• Chain 'E':
  Compound: Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component
  Species: Thermus thermophilus [TaxId:300852]
  Gene: TTHA0233
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q5SLR0
• Chain 'F':
  Compound: Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component
  Species: Thermus thermophilus [TaxId:300852]
  Gene: TTHA0232
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q5SLR1 (1-End)
    • initiating methionine (0)
  Domains in SCOPe 2.06: d2eq9f_
• Chain 'G':
  Compound: Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component
  Species: Thermus thermophilus [TaxId:300852]
  Gene: TTHA0233
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q5SLR0
• Chain 'H':
  Compound: Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component
  Species: Thermus thermophilus [TaxId:300852]
  Gene: TTHA0233
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q5SLR0
• Chain 'I':
  Compound: Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component
  Species: Thermus thermophilus [TaxId:300852]
  Gene: TTHA0232
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q5SLR1 (1-End)
    • initiating methionine (0)
  Domains in SCOPe 2.06: d2eq9i_
• Chain 'J':
  Compound: Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component
  Species: Thermus thermophilus [TaxId:300852]
  Gene: TTHA0233
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q5SLR0
• Chain 'K':
  Compound: Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component
  Species: Thermus thermophilus [TaxId:300852]
  Gene: TTHA0233
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q5SLR0
• Chain 'L':
  Compound: Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component
  Species: Thermus thermophilus [TaxId:300852]
  Gene: TTHA0232
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q5SLR1 (1-End)
    • initiating methionine (0)
  Domains in SCOPe 2.06: d2eq9l_
• Heterogens: FAD, HOH

PDB Chain Sequences:

• Chain 'A':
  No sequence available.
  
  
• Chain 'B':
  No sequence available.
  
  
• Chain 'C':
  Sequence, based on SEQRES records: (download)
  

  >2eq9C (C:)
  mlavpaarklarelgipieevpgsgplgrvrvedvrayaer
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >2eq9C (C:)
  mlavpaarklarelgipieevpgsgplgrvrvedvrayae
  

  
  
• Chain 'D':
  No sequence available.
  
  
• Chain 'E':
  No sequence available.
  
  
• Chain 'F':
  Sequence, based on SEQRES records: (download)
  

  >2eq9F (F:)
  mlavpaarklarelgipieevpgsgplgrvrvedvrayaer
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >2eq9F (F:)
  mlavpaarklarelgipieevpgsgplgrvrvedvrayae
  

  
  
• Chain 'G':
  No sequence available.
  
  
• Chain 'H':
  No sequence available.
  
  
• Chain 'I':
  Sequence, based on SEQRES records: (download)
  

  >2eq9I (I:)
  mlavpaarklarelgipieevpgsgplgrvrvedvrayaer
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >2eq9I (I:)
  mlavpaarklarelgipieevpgsgplgrvrvedvrayae
  

  
  
• Chain 'J':
  No sequence available.
  
  
• Chain 'K':
  No sequence available.
  
  
• Chain 'L':
  Sequence, based on SEQRES records: (download)
  

  >2eq9L (L:)
  mlavpaarklarelgipieevpgsgplgrvrvedvrayaer
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >2eq9L (L:)
  mlavpaarklarelgipieevpgsgplgrvrvedvrayae