PDB entry 2ek1
View 2ek1 on RCSB PDB site
Description: Crystal structure of RNA-binding motif of human rna-binding protein 12
Class: RNA binding protein
Keywords: RNA recognition motif, dimer, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, RNA BINDING PROTEIN
Deposited on
2007-03-22, released
2008-04-01
The last revision prior to the SCOPe 2.01 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.208
AEROSPACI score: 0.41
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: RNA-binding protein 12
Species: Homo sapiens [TaxId:9606]
Gene: RBM12, KIAA0765
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d2ek1a_ - Chain 'B':
Compound: RNA-binding protein 12
Species: Homo sapiens [TaxId:9606]
Gene: RBM12, KIAA0765
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d2ek1b_ - Chain 'C':
Compound: RNA-binding protein 12
Species: Homo sapiens [TaxId:9606]
Gene: RBM12, KIAA0765
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d2ek1c_ - Chain 'D':
Compound: RNA-binding protein 12
Species: Homo sapiens [TaxId:9606]
Gene: RBM12, KIAA0765
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d2ek1d_ - Chain 'E':
Compound: RNA-binding protein 12
Species: Homo sapiens [TaxId:9606]
Gene: RBM12, KIAA0765
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d2ek1e_ - Chain 'F':
Compound: RNA-binding protein 12
Species: Homo sapiens [TaxId:9606]
Gene: RBM12, KIAA0765
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d2ek1f_ - Chain 'G':
Compound: RNA-binding protein 12
Species: Homo sapiens [TaxId:9606]
Gene: RBM12, KIAA0765
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d2ek1g_ - Chain 'H':
Compound: RNA-binding protein 12
Species: Homo sapiens [TaxId:9606]
Gene: RBM12, KIAA0765
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d2ek1h_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2ek1A (A:)
gssgssgsssgkpgptvikvqnmpftvsideildffygyqvipgsvclkynekgmptgea
mvafesrdeataavidlndrpigsrkvklsgpssg
Sequence, based on observed residues (ATOM records): (download)
>2ek1A (A:)
ptvikvqnmpftvsideildffygyqvipgsvclkynekgmptgeamvafesrdeataav
idlndrpigsrkvklsgps
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2ek1B (B:)
gssgssgsssgkpgptvikvqnmpftvsideildffygyqvipgsvclkynekgmptgea
mvafesrdeataavidlndrpigsrkvklsgpssg
Sequence, based on observed residues (ATOM records): (download)
>2ek1B (B:)
ptvikvqnmpftvsideildffygyqvipgsvclkynekgmptgeamvafesrdeataav
idlndrpigsrkvklsgp
- Chain 'C':
Sequence, based on SEQRES records: (download)
>2ek1C (C:)
gssgssgsssgkpgptvikvqnmpftvsideildffygyqvipgsvclkynekgmptgea
mvafesrdeataavidlndrpigsrkvklsgpssg
Sequence, based on observed residues (ATOM records): (download)
>2ek1C (C:)
ptvikvqnmpftvsideildffygyqvipgsvclkynekgmptgeamvafesrdeataav
idlndrpigsrkvklsgps
- Chain 'D':
Sequence, based on SEQRES records: (download)
>2ek1D (D:)
gssgssgsssgkpgptvikvqnmpftvsideildffygyqvipgsvclkynekgmptgea
mvafesrdeataavidlndrpigsrkvklsgpssg
Sequence, based on observed residues (ATOM records): (download)
>2ek1D (D:)
gptvikvqnmpftvsideildffygyqvipgsvclkynekgmptgeamvafesrdeataa
vidlndrpigsrkvklsgp
- Chain 'E':
Sequence, based on SEQRES records: (download)
>2ek1E (E:)
gssgssgsssgkpgptvikvqnmpftvsideildffygyqvipgsvclkynekgmptgea
mvafesrdeataavidlndrpigsrkvklsgpssg
Sequence, based on observed residues (ATOM records): (download)
>2ek1E (E:)
ptvikvqnmpftvsideildffygyqvipgsvclkynekgmptgeamvafesrdeataav
idlndrpigsrkvklsgps
- Chain 'F':
Sequence, based on SEQRES records: (download)
>2ek1F (F:)
gssgssgsssgkpgptvikvqnmpftvsideildffygyqvipgsvclkynekgmptgea
mvafesrdeataavidlndrpigsrkvklsgpssg
Sequence, based on observed residues (ATOM records): (download)
>2ek1F (F:)
ptvikvqnmpftvsideildffygyqvipgsvclkynekgmptgeamvafesrdeataav
idlndrpigsrkvklsgps
- Chain 'G':
Sequence, based on SEQRES records: (download)
>2ek1G (G:)
gssgssgsssgkpgptvikvqnmpftvsideildffygyqvipgsvclkynekgmptgea
mvafesrdeataavidlndrpigsrkvklsgpssg
Sequence, based on observed residues (ATOM records): (download)
>2ek1G (G:)
tvikvqnmpftvsideildffygyqvipgsvclkynekgmptgeamvafesrdeataavi
dlndrpigsrkvklsgp
- Chain 'H':
Sequence, based on SEQRES records: (download)
>2ek1H (H:)
gssgssgsssgkpgptvikvqnmpftvsideildffygyqvipgsvclkynekgmptgea
mvafesrdeataavidlndrpigsrkvklsgpssg
Sequence, based on observed residues (ATOM records): (download)
>2ek1H (H:)
ptvikvqnmpftvsideildffygyqvipgsvclkynekgmptgeamvafesrdeataav
idlndrpigsrkvklsgps