PDB entry 2efx

View 2efx on RCSB PDB site
Description: The crystal structure of D-amino acid amidase from Ochrobactrum anthropi SV3 complexed with L-phenylalanine amide
Class: hydrolase
Keywords: penicillin recognizing proteins, D-stereospecific amidase, L-phenylalanine amide, hydrolase
Deposited on 2007-02-26, released 2007-03-06
The last revision prior to the SCOPe 2.08 freeze date was dated 2008-03-04, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.19
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: D-amino acid amidase
    Species: Ochrobactrum anthropi [TaxId:529]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2efxa_
  • Chain 'B':
    Compound: D-amino acid amidase
    Species: Ochrobactrum anthropi [TaxId:529]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2efxb_
  • Chain 'C':
    Compound: D-amino acid amidase
    Species: Ochrobactrum anthropi [TaxId:529]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2efxc_
  • Chain 'D':
    Compound: D-amino acid amidase
    Species: Ochrobactrum anthropi [TaxId:529]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2efxd_
  • Chain 'E':
    Compound: D-amino acid amidase
    Species: Ochrobactrum anthropi [TaxId:529]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2efxe_
  • Chain 'F':
    Compound: D-amino acid amidase
    Species: Ochrobactrum anthropi [TaxId:529]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2efxf_
  • Heterogens: BA, NFA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2efxA (A:)
msdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfrias
ctksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmi
sdkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifap
lgmkdtwvgthetfpiereargymhaaaddenpqwdvsgagdpvdgvwdstewfplsgan
aagdmvstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmryg
sselkghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaikn
srs

    Sequence, based on observed residues (ATOM records): (download) 
    >2efxA (A:)
sdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfriasc
tksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmis
dkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifapl
gmkdtwvgthetfpiereargymhaaaddenpqwdvsgagdpvdgvwdstewfplsgana
agdmvstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmrygs
selkghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaikns
rs

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2efxB (B:)
msdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfrias
ctksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmi
sdkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifap
lgmkdtwvgthetfpiereargymhaaaddenpqwdvsgagdpvdgvwdstewfplsgan
aagdmvstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmryg
sselkghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaikn
srs

    Sequence, based on observed residues (ATOM records): (download) 
    >2efxB (B:)
sdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfriasc
tksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmis
dkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifapl
gmkdtwvgthetfpiereargymhaaaddenpqwdvsgagdpvdgvwdstewfplsgana
agdmvstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmrygs
selkghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaikns
rs

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2efxC (C:)
msdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfrias
ctksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmi
sdkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifap
lgmkdtwvgthetfpiereargymhaaaddenpqwdvsgagdpvdgvwdstewfplsgan
aagdmvstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmryg
sselkghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaikn
srs

    Sequence, based on observed residues (ATOM records): (download) 
    >2efxC (C:)
dlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfriasct
ksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmisd
kswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifaplg
mkdtwvgthetfpiereargymhadenpqwdvsgagdpvdgvwdstewfplsganaagdm
vstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmrygsselk
ghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaiknsrs

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2efxD (D:)
msdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfrias
ctksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmi
sdkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifap
lgmkdtwvgthetfpiereargymhaaaddenpqwdvsgagdpvdgvwdstewfplsgan
aagdmvstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmryg
sselkghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaikn
srs

    Sequence, based on observed residues (ATOM records): (download) 
    >2efxD (D:)
sdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfriasc
tksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmis
dkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifapl
gmkdtwvgthetfpiereargymhaaagdpvdgvwdstewfplsganaagdmvstprdiv
kflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmrygsselkghlgqipg
htsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaiknsrs

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2efxE (E:)
msdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfrias
ctksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmi
sdkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifap
lgmkdtwvgthetfpiereargymhaaaddenpqwdvsgagdpvdgvwdstewfplsgan
aagdmvstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmryg
sselkghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaikn
srs

    Sequence, based on observed residues (ATOM records): (download) 
    >2efxE (E:)
sdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadknkmpmtgdhlfriasct
ksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmisd
kswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifaplg
mkdtwvgthetfpiereargymhapvdgvwdstewfplsganaagdmvstprdivkflna
lfdgrildqkrlwemkdnikpaffpgsntvanghglllmrygsselkghlgqipghtsim
grdeetgaalmliqnsgagdfesfylkgvnepvdrvleaiknsrs

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2efxF (F:)
msdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfrias
ctksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmi
sdkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifap
lgmkdtwvgthetfpiereargymhaaaddenpqwdvsgagdpvdgvwdstewfplsgan
aagdmvstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmryg
sselkghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaikn
srs

    Sequence, based on observed residues (ATOM records): (download) 
    >2efxF (F:)
qgildvagsalclpgetsgyakgdhlfriasctksfiatglhllvqdgtvdldepitrwf
pdlpkaaqmpvrillnhrsglpdfetsmpmisdkswtaqeivdfsfrhgvqkepwhgmey
sntgyvlagmiiahetgkpysdhlrsriplgdvgthetfpiagmhawdstwfplsganaa
gdmstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmrygsse
lkghlgqipghtsimgrdeetgaalmliqsgagdfesfylkgvnepvdrveaikns