PDB entry 2e5w

View 2e5w on RCSB PDB site
Description: Crystal structure of spermidine synthase from Pyrococcus horikoshii OT3
Class: transferase
Keywords: spermidine synthase, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, TRANSFERASE
Deposited on 2006-12-25, released 2007-06-26
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.194
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Probable spermidine synthase
    Species: Pyrococcus horikoshii [TaxId:70601]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2e5wa_
  • Chain 'B':
    Compound: Probable spermidine synthase
    Species: Pyrococcus horikoshii [TaxId:70601]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2e5wb_
  • Chain 'C':
    Compound: Probable spermidine synthase
    Species: Pyrococcus horikoshii [TaxId:70601]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2e5wc_
  • Chain 'D':
    Compound: Probable spermidine synthase
    Species: Pyrococcus horikoshii [TaxId:70601]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2e5wd_
  • Heterogens: ACT, AG3, MTA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2e5wA (A:)
mrdmefiewyprgygvafkvkrkileeqseyqkievyetegfgkllaidgtvqlvtegek
syheplvhpamlahpnprrvliigggdggairevlkheeveevimveidkkvieisakyi
gidggilekmlsdkhekgkliigdgvkfieensgfdviivdstdpvgpaemlfseefykn
ayralndpgiyvtqagsvylftdefltayrkmrkvfdkvyyysfpvigyaspwaflvgvk
gsidfmkvdaekgkklgleyydpdkhetlfqmpryivqml

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2e5wB (B:)
mrdmefiewyprgygvafkvkrkileeqseyqkievyetegfgkllaidgtvqlvtegek
syheplvhpamlahpnprrvliigggdggairevlkheeveevimveidkkvieisakyi
gidggilekmlsdkhekgkliigdgvkfieensgfdviivdstdpvgpaemlfseefykn
ayralndpgiyvtqagsvylftdefltayrkmrkvfdkvyyysfpvigyaspwaflvgvk
gsidfmkvdaekgkklgleyydpdkhetlfqmpryivqml

    Sequence, based on observed residues (ATOM records): (download) 
    >2e5wB (B:)
mefiewyprgygvafkvkrkileeqseyqkievyetegfgkllaidgtvqlvtegeksyh
eplvhpamlahpnprrvliigggdggairevlkheeveevimveidkkvieisakyigid
ggilekmlsdkhekgkliigdgvkfieensgfdviivdsmlfseefyknayralndpgiy
vtqagsvylftdefltayrkmrkvfdkvyyysfpvigyaspwaflvgvkgsidfmkvdae
kgkklgleyydpdkhetlfqmpryivqml

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2e5wC (C:)
mrdmefiewyprgygvafkvkrkileeqseyqkievyetegfgkllaidgtvqlvtegek
syheplvhpamlahpnprrvliigggdggairevlkheeveevimveidkkvieisakyi
gidggilekmlsdkhekgkliigdgvkfieensgfdviivdstdpvgpaemlfseefykn
ayralndpgiyvtqagsvylftdefltayrkmrkvfdkvyyysfpvigyaspwaflvgvk
gsidfmkvdaekgkklgleyydpdkhetlfqmpryivqml

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2e5wD (D:)
mrdmefiewyprgygvafkvkrkileeqseyqkievyetegfgkllaidgtvqlvtegek
syheplvhpamlahpnprrvliigggdggairevlkheeveevimveidkkvieisakyi
gidggilekmlsdkhekgkliigdgvkfieensgfdviivdstdpvgpaemlfseefykn
ayralndpgiyvtqagsvylftdefltayrkmrkvfdkvyyysfpvigyaspwaflvgvk
gsidfmkvdaekgkklgleyydpdkhetlfqmpryivqml

    Sequence, based on observed residues (ATOM records): (download) 
    >2e5wD (D:)
mefiewyprgygvafkvkrkileeqseyqkievyetegfgkllaidgtvqlvtegeksyh
eplvhpamlahpnprrvliigggdggairevlkheeveevimveidkkvieisakyigid
ggilekmlsdkhekgkliigdgvkfieensgfdviivdsmlfseefyknayralndpgiy
vtqagsvylftdefltayrkmrkvfdkvyyysfpvigyaspwaflvgvkgsidfmkvdae
kgkklgleyydpdkhetlfqmpryivqml