PDB entry 2dzo

View 2dzo on RCSB PDB site
Description: Crystal structure analysis of yeast Nas6p complexed with the proteasome subunit, rpt3
Class: protein binding
Keywords: ankyrin repeats, a-helical domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, PROTEIN BINDING
Deposited on 2006-09-29, released 2007-10-16
The last revision prior to the SCOPe 2.04 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.212
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Probable 26S proteasome regulatory subunit p28
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d2dzoa_
  • Chain 'B':
    Compound: 26S protease regulatory subunit 6B homolog
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Probable 26S proteasome regulatory subunit p28
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d2dzoc_
  • Chain 'D':
    Compound: 26S protease regulatory subunit 6B homolog
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2dzoA (A:)
msnyplhqacmeneffkvqellhskpslllqkdqdgriplhwsvsfqaheitsfllskme
nvnlddypddsgwtpfhiacsvgnlevvkslydrplkpdlnkitnqgvtclhlavgkkwf
evsqfliengasvrikdkfnqiplhraasvgslkliellcglgksavnwqdkqgwtplfh
alaeghgdaavllvekygaeydlvdnkgakaedvalneqvkkfflnnv

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2dzoC (C:)
msnyplhqacmeneffkvqellhskpslllqkdqdgriplhwsvsfqaheitsfllskme
nvnlddypddsgwtpfhiacsvgnlevvkslydrplkpdlnkitnqgvtclhlavgkkwf
evsqfliengasvrikdkfnqiplhraasvgslkliellcglgksavnwqdkqgwtplfh
alaeghgdaavllvekygaeydlvdnkgakaedvalneqvkkfflnnv

    Sequence, based on observed residues (ATOM records): (download) 
    >2dzoC (C:)
snyplhqacmeneffkvqellhskpslllqkdqdgriplhwsvsfqaheitsfllskmen
vnlddypddsgwtpfhiacsvgnlevvkslydrplkpdlnkitnqgvtclhlavgkkwfe
vsqfliengasvrikdkfnqiplhraasvgslkliellcglgksavnwqdkqgwtplfha
laeghgdaavllvekygaeydlvdnkgakaedvalneqvkkfflnnv

  • Chain 'D':
    No sequence available.