PDB entry 2dyy

View 2dyy on RCSB PDB site
Description: Crystal structure of putative translation initiation inhibitor PH0854 from Pyrococcus horikoshii
Class: structural genomics, unknown function
Keywords: Putative translation initiation inhibitor, Pyrococcus horikoshii, trimer, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, UNKNOWN FUNCTION
Deposited on 2006-09-19, released 2007-03-19
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.209
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: UPF0076 protein PH0854
    Species: Pyrococcus horikoshii [TaxId:53953]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2dyya_
  • Chain 'B':
    Compound: UPF0076 protein PH0854
    Species: Pyrococcus horikoshii [TaxId:53953]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2dyyb_
  • Chain 'C':
    Compound: UPF0076 protein PH0854
    Species: Pyrococcus horikoshii [TaxId:53953]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2dyyc_
  • Chain 'D':
    Compound: UPF0076 protein PH0854
    Species: Pyrococcus horikoshii [TaxId:53953]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2dyyd_
  • Chain 'E':
    Compound: UPF0076 protein PH0854
    Species: Pyrococcus horikoshii [TaxId:53953]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2dyye_
  • Chain 'F':
    Compound: UPF0076 protein PH0854
    Species: Pyrococcus horikoshii [TaxId:53953]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2dyyf_
  • Chain 'G':
    Compound: UPF0076 protein PH0854
    Species: Pyrococcus horikoshii [TaxId:53953]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2dyyg_
  • Chain 'H':
    Compound: UPF0076 protein PH0854
    Species: Pyrococcus horikoshii [TaxId:53953]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2dyyh_
  • Chain 'I':
    Compound: UPF0076 protein PH0854
    Species: Pyrococcus horikoshii [TaxId:53953]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2dyyi_
  • Chain 'J':
    Compound: UPF0076 protein PH0854
    Species: Pyrococcus horikoshii [TaxId:53953]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2dyyj_
  • Chain 'K':
    Compound: UPF0076 protein PH0854
    Species: Pyrococcus horikoshii [TaxId:53953]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2dyyk_
  • Chain 'L':
    Compound: UPF0076 protein PH0854
    Species: Pyrococcus horikoshii [TaxId:53953]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2dyyl_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2dyyA (A:)
mkeviftenapkpigpysqaikagnflfiagqipidpktgeivkgdikdqtrqvlenika
ileaagyslndvikvtvylkdmndfakmnevyaeyfgeskparvavevsrlpkdvlieie
aiayke

    Sequence, based on observed residues (ATOM records): (download) 
    >2dyyA (A:)
mkeviftenapkpigpysqaikagnflfiagqipidpktgeivkgdikdqtrqvlenika
ileaagyslndvikvtvylkdndfakmnevyaeyfgeskparvavevsrlpkdvlieiea
iayke

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2dyyB (B:)
mkeviftenapkpigpysqaikagnflfiagqipidpktgeivkgdikdqtrqvlenika
ileaagyslndvikvtvylkdmndfakmnevyaeyfgeskparvavevsrlpkdvlieie
aiayke

    Sequence, based on observed residues (ATOM records): (download) 
    >2dyyB (B:)
mkeviftenapkpigpysqaikagnflfiagqipidpktgeivkgdikdqtrqvlenika
ileaagyslndvikvtvylkdnevyaeyfgeskparvavevsrlpkdvlieieaiayke

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2dyyC (C:)
mkeviftenapkpigpysqaikagnflfiagqipidpktgeivkgdikdqtrqvlenika
ileaagyslndvikvtvylkdmndfakmnevyaeyfgeskparvavevsrlpkdvlieie
aiayke

    Sequence, based on observed residues (ATOM records): (download) 
    >2dyyC (C:)
mkeviftenapkpigpysqaikagnflfiagqipidpktgeivkgdikdqtrqvlenika
ileaagyslndvikvtvylkdnevyaeyfgeskparvavevsrlpkdvlieieaiayke

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2dyyD (D:)
mkeviftenapkpigpysqaikagnflfiagqipidpktgeivkgdikdqtrqvlenika
ileaagyslndvikvtvylkdmndfakmnevyaeyfgeskparvavevsrlpkdvlieie
aiayke

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2dyyE (E:)
mkeviftenapkpigpysqaikagnflfiagqipidpktgeivkgdikdqtrqvlenika
ileaagyslndvikvtvylkdmndfakmnevyaeyfgeskparvavevsrlpkdvlieie
aiayke

    Sequence, based on observed residues (ATOM records): (download) 
    >2dyyE (E:)
mkeviftenapkpigpysqaikagnflfiagqipidpktgeivgdikdqtrqvlenikai
leaagyslndvikvtvylkdakmnevyaeyfgeskparvavevsrlpkdvlieieaiayk

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2dyyF (F:)
mkeviftenapkpigpysqaikagnflfiagqipidpktgeivkgdikdqtrqvlenika
ileaagyslndvikvtvylkdmndfakmnevyaeyfgeskparvavevsrlpkdvlieie
aiayke

    Sequence, based on observed residues (ATOM records): (download) 
    >2dyyF (F:)
keviftenapkpigpysqaikagnflfiagqipidpktgeivkgdikdqtrqvlenikai
leaagyslndvikvtvylkmnevyaeyfgeskparvavevsrlpkdvlieieaiayke

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >2dyyG (G:)
mkeviftenapkpigpysqaikagnflfiagqipidpktgeivkgdikdqtrqvlenika
ileaagyslndvikvtvylkdmndfakmnevyaeyfgeskparvavevsrlpkdvlieie
aiayke

    Sequence, based on observed residues (ATOM records): (download) 
    >2dyyG (G:)
keviftenapkpigpysqaikagnflfiagqipidpktgeivkgdikdqtrqvlenikai
leaagyslndvikvtvylkdmndfakmnevyaeyfgeskparvavevsrlpkdvlieiea
iayke

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >2dyyH (H:)
mkeviftenapkpigpysqaikagnflfiagqipidpktgeivkgdikdqtrqvlenika
ileaagyslndvikvtvylkdmndfakmnevyaeyfgeskparvavevsrlpkdvlieie
aiayke

    Sequence, based on observed residues (ATOM records): (download) 
    >2dyyH (H:)
mkeviftenapkpigpysqaikagnflfiagqipidpktgeivgdikdqtrqvlenikai
leaagyslndvikvtvylkdfakmnevyaeyfgeskparvavevsrlpkdvlieieaiay
ke

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >2dyyI (I:)
mkeviftenapkpigpysqaikagnflfiagqipidpktgeivkgdikdqtrqvlenika
ileaagyslndvikvtvylkdmndfakmnevyaeyfgeskparvavevsrlpkdvlieie
aiayke

    Sequence, based on observed residues (ATOM records): (download) 
    >2dyyI (I:)
keviftenapkpigpysqaikagnflfiagqipidpktgeivkgdikdqtrqvlenikai
leaagyslndvikvtvylkdvyaeyfgeskparvavevsrlpkdvlieieaiayke

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >2dyyJ (J:)
mkeviftenapkpigpysqaikagnflfiagqipidpktgeivkgdikdqtrqvlenika
ileaagyslndvikvtvylkdmndfakmnevyaeyfgeskparvavevsrlpkdvlieie
aiayke

    Sequence, based on observed residues (ATOM records): (download) 
    >2dyyJ (J:)
mkeviftenapkpigpysqaikagnflfiagqipidpktgeivkgdikdqtrqvlenika
ileaagyslndvikvtvylkndfakmnevyaeyfgeskparvavevsrlpkdvlieieai
ayke

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >2dyyK (K:)
mkeviftenapkpigpysqaikagnflfiagqipidpktgeivkgdikdqtrqvlenika
ileaagyslndvikvtvylkdmndfakmnevyaeyfgeskparvavevsrlpkdvlieie
aiayke

    Sequence, based on observed residues (ATOM records): (download) 
    >2dyyK (K:)
keviftenapkpigpysqaikagnflfiagqipidpktgeivkgdikdqtrqvlenikai
leaagyslndvikvtvylkddfakmnevyaeyfgeskparvavevsrlpkdvlieieaia
yke

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >2dyyL (L:)
mkeviftenapkpigpysqaikagnflfiagqipidpktgeivkgdikdqtrqvlenika
ileaagyslndvikvtvylkdmndfakmnevyaeyfgeskparvavevsrlpkdvlieie
aiayke

    Sequence, based on observed residues (ATOM records): (download) 
    >2dyyL (L:)
mkeviftenapkpigpysqaikagnflfiagqipidpktgeivkgdikdqtrqvlenika
ileaagyslndvikvtvylkdnevyaeyfgeskparvavevsrlpkdvlieieaiayke