PDB entry 2dyp

View 2dyp on RCSB PDB site
Description: Crystal Structure of LILRB2(LIR2/ILT4/CD85d) complexed with HLA-G
Class: immune system
Keywords: Immunoglobulin-like, IMMUNE SYSTEM
Deposited on 2006-09-15, released 2006-11-07
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.233
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: HLA class I histocompatibility antigen, alpha chain G
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P17693 (Start-276)
      • engineered (42)
    Domains in SCOPe 2.06: d2dypa1, d2dypa2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (1-99)
      • initiating methionine (0)
    Domains in SCOPe 2.06: d2dypb2, d2dypb3
  • Chain 'C':
    Compound: 9 Mer Peptide From Histone H2A.x
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Leukocyte immunoglobulin-like receptor subfamily B member 2
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8N423
      • see remark 999 (60)
    Domains in SCOPe 2.06: d2dypd1, d2dypd2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2dypA (A:)
    mgshsmryfsaavsrpgrgeprfiamgyvddtqfvrfdsdsasprmeprapwveqegpey
    weeetrntkahaqtdrmnlqtlrgyynqseasshtlqwmigcdlgsdgrllrgyeqyayd
    gkdylalnedlrswtaadtaaqiskrkceaanvaeqrraylegtcvewlhrylengkeml
    qradppkthvthhpvfdyeatlrcwalgfypaeiiltwqrdgedqtqdvelvetrpagdg
    tfqkwaavvvpsgeeqrytchvqheglpeplmlrwkq
    

    Sequence, based on observed residues (ATOM records): (download)
    >2dypA (A:)
    shsmryfsaavsrpgrgeprfiamgyvddtqfvrfdsdsasprmeprapwveqegpeywe
    eetrntkahaqtdrmnlqtlrgyynqseasshtlqwmigcdlgsdgrllrgyeqyaydgk
    dylalnedlrswtaadtaaqiskrkceaanvaeqrraylegtcvewlhrylengkemlqr
    adppkthvthhpvfdyeatlrcwalgfypaeiiltwqrdgedqtqdvelvetrpagdgtf
    qkwaavvvpsgeeqrytchvqheglpeplmlrwkq
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2dypB (B:)
    miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
    wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
    

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >2dypD (D:)
    gtipkptlwaepdsvitqgspvtlscqgsleaqeyrlyrekksaswitrirpelvkngqf
    ripsitwehtgrygcqyysrarwselsdplvlvmtgaypkptlsaqpspvvtsggrvtlq
    cesqvafggfilckegedehpqclnsqphargssraifsvgpvspnrrwshrcygydlns
    pyvwsspsdllellvp
    

    Sequence, based on observed residues (ATOM records): (download)
    >2dypD (D:)
    ipkptlwaepdsvitqgspvtlscqgsleaqeyrlyrekksaswitrirpelvkngqfri
    psitwehtgrygcqyysrarwselsdplvlvmtgaypkptlsaqpspvvtsggrvtlqce
    sqvafggfilckeehpqclnsqssraifsvgpvspnrrwshrcygydlnspyvwsspsdl
    lellv