SCOPe 2.08: Structural Classification of Proteins

PDB entry 2dxi

View 2dxi on RCSB PDB site
Description: 2.2 A crystal structure of glutamyl-tRNA synthetase from Thermus thermophilus complexed with tRNA(Glu), ATP, and L-glutamol
Class: ligase/RNA
Keywords: LIGASE, RNA, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, ligase/RNA COMPLEX
Deposited on 2006-08-28, released 2006-10-31
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.214
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Glutamyl-tRNA synthetase
Species: Thermus thermophilus [TaxId:274]
Database cross-references and differences (RAF-indexed):
- Uniprot P27000 (0-467)
Domains in SCOPe 2.08: d2dxia1, d2dxia2
Chain 'B':
Compound: Glutamyl-tRNA synthetase
Species: Thermus thermophilus [TaxId:274]
Database cross-references and differences (RAF-indexed):
- Uniprot P27000 (0-467)
Domains in SCOPe 2.08: d2dxib1, d2dxib2
Chain 'C':
Compound: tRNA
Species: synthetic, synthetic
Chain 'D':
Compound: tRNA
Species: synthetic, synthetic
Heterogens: MG, ATP, GAU, HOH

PDB Chain Sequences:

Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)

>2dxiA (A:)
mvvtriapsptgdphvgtayialfnyawarrnggrfivriedtdraryvpgaeerilaal
kwlglsydegpdvggphgpyrqserlplyqkyaeellkrgwayrafetpeeleqirkekg
gydgrarnippeeaeerarrgephvirlkvprpgttevkdelrgvvvydnqeipdvvllk
sdgyptyhlanvvddhlmgvtdviraeewlvstpihvllyrafgweaprfyhmpllrnpd
ktkiskrkshtsldwykaegflpealrnylclmgfsmpdgreiftleefiqaftwervsl
ggpvfdleklrwmngkyirevlsleevaervkpflreaglsweseaylrravelmrprfd
tlkefpekarylftedypvsekaqrkleeglpllkelyprlraqeewteaaleallrgfa
aekgvklgqvaqplraaltgsletpglfeilallgkeralrrlerala

Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)

>2dxiB (B:)
mvvtriapsptgdphvgtayialfnyawarrnggrfivriedtdraryvpgaeerilaal
kwlglsydegpdvggphgpyrqserlplyqkyaeellkrgwayrafetpeeleqirkekg
gydgrarnippeeaeerarrgephvirlkvprpgttevkdelrgvvvydnqeipdvvllk
sdgyptyhlanvvddhlmgvtdviraeewlvstpihvllyrafgweaprfyhmpllrnpd
ktkiskrkshtsldwykaegflpealrnylclmgfsmpdgreiftleefiqaftwervsl
ggpvfdleklrwmngkyirevlsleevaervkpflreaglsweseaylrravelmrprfd
tlkefpekarylftedypvsekaqrkleeglpllkelyprlraqeewteaaleallrgfa
aekgvklgqvaqplraaltgsletpglfeilallgkeralrrlerala

Chain 'C':
No sequence available.
Chain 'D':
No sequence available.