PDB entry 2dpl

View 2dpl on RCSB PDB site
Description: Crystal Structure of the GMP synthase from Pyrococcus horikoshii OT3
Class: ligase
Keywords: Pyrococcus horikoshii OT3, structural genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, LIGASE
Deposited on 2006-05-12, released 2006-11-12
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.43 Å
R-factor: 0.236
AEROSPACI score: 0.62 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: GMP synthase [glutamine-hydrolyzing] subunit B
    Species: Pyrococcus horikoshii [TaxId:70601]
    Gene: guaAB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2dpla1, d2dpla2
  • Chain 'B':
    Compound: GMP synthase [glutamine-hydrolyzing] subunit B
    Species: Pyrococcus horikoshii [TaxId:70601]
    Gene: guaAB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2dplb1, d2dplb2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2dplA (A:)
mdwgrfveekvreiretvgdskaiialsggvdsstaavlahkaigdrlhavfvntgflrk
gepefvvktfrdefgmnlhyvdaqdrffsalkgvtdpeekrkiigrvfievfeevakkig
aeyliqgtiapdwiesqgkikshhnvgglpeklnlklieplrdlykdevrelakflglpe
kiynrmpfpgpglavrvigevtpekirivreanaiveeeveraglrpwqafavllgvktv
gvqgdirayketiavrivesidgmtanamnvpwevlqriafritseipevgrvlyditnk
ppatiefe

    Sequence, based on observed residues (ATOM records): (download) 
    >2dplA (A:)
mdwgrfveekvreiretvgdskaiialsggvdsstaavlahkaigdrlhavfvntgflrk
gepefvvktfrdefgmnlhyvdaqdrffsalkgvtdpeekrkiigrvfievfeevakkig
aeyliqgtiaplnlklieplrdlykdevrelakflglpekiynrmpfpgpglavrvigev
tpekirivreanaiveeeveraglrpwqafavllgvktvgvqgdirayketiavrivesi
dgmtanamnvpwevlqriafritseipevgrvlyditnkppatiefe

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2dplB (B:)
mdwgrfveekvreiretvgdskaiialsggvdsstaavlahkaigdrlhavfvntgflrk
gepefvvktfrdefgmnlhyvdaqdrffsalkgvtdpeekrkiigrvfievfeevakkig
aeyliqgtiapdwiesqgkikshhnvgglpeklnlklieplrdlykdevrelakflglpe
kiynrmpfpgpglavrvigevtpekirivreanaiveeeveraglrpwqafavllgvktv
gvqgdirayketiavrivesidgmtanamnvpwevlqriafritseipevgrvlyditnk
ppatiefe

    Sequence, based on observed residues (ATOM records): (download) 
    >2dplB (B:)
fveekvreiretvgdskaiialsggvdsstaavlahkaigdrlhavfvntgflrkgepef
vvktfrdefgmnlhyvdaqdrffsalkgvtdpeekrkiigrvfievfeevakkigaeyli
qgtilklieplrdlykdevrelakflglpekiynrmpfpgpglavrvigevtpekirivr
eanaiveeeveraglrpwqafavllgvktvgvqgdirayketiavrivesidgmtanamn
vpwevlqriafritseipevgrvlyditnkppatiefe