PDB entry 2dns

View 2dns on RCSB PDB site
Description: The crystal structure of D-amino acid amidase from Ochrobactrum anthropi SV3 complexed with D-Phenylalanine
Class: hydrolase
Keywords: D-stereospecific, Amidase, D-Phenylalanine, penicillin recognize protein, HYDROLASE
Deposited on 2006-04-26, released 2006-05-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.199
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: D-amino acid amidase
    Species: Ochrobactrum anthropi [TaxId:529]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2dnsa_
  • Chain 'B':
    Compound: D-amino acid amidase
    Species: Ochrobactrum anthropi [TaxId:529]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2dnsb_
  • Chain 'C':
    Compound: D-amino acid amidase
    Species: Ochrobactrum anthropi [TaxId:529]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2dnsc_
  • Chain 'D':
    Compound: D-amino acid amidase
    Species: Ochrobactrum anthropi [TaxId:529]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2dnsd_
  • Chain 'E':
    Compound: D-amino acid amidase
    Species: Ochrobactrum anthropi [TaxId:529]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2dnse_
  • Chain 'F':
    Compound: D-amino acid amidase
    Species: Ochrobactrum anthropi [TaxId:529]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2dnsf_
  • Heterogens: BA, DPN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2dnsA (A:)
msdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfrias
ctksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmi
sdkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifap
lgmkdtwvgthetfpiereargymhaaaddenpqwdvsgagdpvdgvwdstewfplsgan
aagdmvstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmryg
sselkghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaikn
srs

    Sequence, based on observed residues (ATOM records): (download) 
    >2dnsA (A:)
sdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfriasc
tksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmis
dkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifapl
gmkdtwvgthetfpiereargymhaaaddenpqwdvsgagdpvdgvwdstewfplsgana
agdmvstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmrygs
selkghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaikns
rs

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2dnsB (B:)
msdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfrias
ctksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmi
sdkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifap
lgmkdtwvgthetfpiereargymhaaaddenpqwdvsgagdpvdgvwdstewfplsgan
aagdmvstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmryg
sselkghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaikn
srs

    Sequence, based on observed residues (ATOM records): (download) 
    >2dnsB (B:)
sdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfriasc
tksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmis
dkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifapl
gmkdtwvgthetfpiereargymhaaaddenpqwdvsgagdpvdgvwdstewfplsgana
agdmvstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmrygs
selkghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaikns
rs

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2dnsC (C:)
msdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfrias
ctksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmi
sdkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifap
lgmkdtwvgthetfpiereargymhaaaddenpqwdvsgagdpvdgvwdstewfplsgan
aagdmvstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmryg
sselkghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaikn
srs

    Sequence, based on observed residues (ATOM records): (download) 
    >2dnsC (C:)
dlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfriasct
ksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmisd
kswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifaplg
mkdtwvgthetfpiereargymhaaaddenpqwdvsgagdpvdgvwdstewfplsganaa
gdmvstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmrygss
elkghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaiknsr

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2dnsD (D:)
msdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfrias
ctksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmi
sdkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifap
lgmkdtwvgthetfpiereargymhaaaddenpqwdvsgagdpvdgvwdstewfplsgan
aagdmvstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmryg
sselkghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaikn
srs

    Sequence, based on observed residues (ATOM records): (download) 
    >2dnsD (D:)
sdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfriasc
tksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmis
dkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifapl
gmkdtwvgthetfpiereargymhaaapqwdgagdpvdgvwdstewfplsganaagdmvs
tprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmrygsselkgh
lgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaiknsr

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2dnsE (E:)
msdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfrias
ctksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmi
sdkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifap
lgmkdtwvgthetfpiereargymhaaaddenpqwdvsgagdpvdgvwdstewfplsgan
aagdmvstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmryg
sselkghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaikn
srs

    Sequence, based on observed residues (ATOM records): (download) 
    >2dnsE (E:)
sdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkkmpmtgdhlfriasctk
sfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmisdk
swtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifaplgm
kdtwvgthetfpiereargymhawdsgagdpvdgvwdstewfplsganaagdmvstprdi
vkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmrygsselkghlgqip
ghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaikns

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2dnsF (F:)
msdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfrias
ctksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmi
sdkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifap
lgmkdtwvgthetfpiereargymhaaaddenpqwdvsgagdpvdgvwdstewfplsgan
aagdmvstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmryg
sselkghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaikn
srs

    Sequence, based on observed residues (ATOM records): (download) 
    >2dnsF (F:)
iqgilddhvaalceetspmtgdhlfriasctksfiatglhllvqdgtvdldepitrwfpd
lpkaaqmpvrillnhrsglpdfetsmpmisdkswtaqeivdfsfrhgvqkepwhgmeysn
tgyvlagmiiahetgkpysdhlrsrifaplgmkdtwvgthetfpiereargymhdstewf
plsganaagdmvstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghgl
llmrygsselkghlgqipghtsimgrdeetgaalmliqnsgagdsfygvnepvdrvleai