PDB entry 2dm5

View 2dm5 on RCSB PDB site
Description: Thermodynamic Penalty Arising From Burial of a Ligand Polar Group Within a Hydrophobic Pocket of a Protein Receptor
Class: transport protein
Keywords: beta barrel, lipocalin
Deposited on 2006-04-20, released 2006-10-17
The last revision prior to the SCOP 1.73 freeze date was dated 2006-10-17, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: 0.19
AEROSPACI score: 0.52 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: major urinary protein
    Species: MUS MUSCULUS
    Gene: MUP1
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2dm5a1
  • Heterogens: CD, ODI, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2dm5A (A:)
mrgshhhhhhgseeasstgrnfnvekingewhtiilasdkrekiedngnfrlfleqihvl
ekslvlkfhtvrdeecselsmvadktekageysvtydgfntftipktdydnflmahline
kdgetfqlmglygrepdlssdikerfaqlceehgilreniidlsnanrclqare

    Sequence, based on observed residues (ATOM records): (download) 
    >2dm5A (A:)
eeasstgrnfnvekingewhtiilasdkrekiedngnfrlfleqihvlekslvlkfhtvr
deecselsmvadktekageysvtydgfntftipktdydnflmahlinekdgetfqlmgly
grepdlssdikerfaqlceehgilreniidlsnanrc