PDB entry 2dfz

View 2dfz on RCSB PDB site
Description: Crystal structure of cyclodextrin-binding protein complexed with gamma-cyclodextrin
Class: sugar binding protein
Keywords: cyclodextrin, SUGAR BINDING PROTEIN
Deposited on 2006-03-07, released 2007-03-06
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-10, with a file datestamp of 2009-02-06.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.218
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: periplasmic binding protein
    Species: Thermoactinomyces vulgaris [TaxId:2026]
    Database cross-references and differences (RAF-indexed):
    • GB BAB40635 (0-380)
    Domains in SCOPe 2.06: d2dfza_
  • Chain 'B':
    Compound: periplasmic binding protein
    Species: Thermoactinomyces vulgaris [TaxId:2026]
    Database cross-references and differences (RAF-indexed):
    • GB BAB40635 (0-380)
    Domains in SCOPe 2.06: d2dfzb_
  • Chain 'C':
    Compound: periplasmic binding protein
    Species: Thermoactinomyces vulgaris [TaxId:2026]
    Database cross-references and differences (RAF-indexed):
    • GB BAB40635 (0-380)
    Domains in SCOPe 2.06: d2dfzc_
  • Chain 'D':
    Compound: periplasmic binding protein
    Species: Thermoactinomyces vulgaris [TaxId:2026]
    Database cross-references and differences (RAF-indexed):
    • GB BAB40635 (0-380)
    Domains in SCOPe 2.06: d2dfzd_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2dfzA (A:)
kpdklvvwenaddgvqlnntkkwageftkktgiqvevvpvallkqqekltldgpagkgad
lvtwphdrlgeavtkgllqpiqvdnsvknqfddvamkaltyggklyglpkaiesvaliyn
kklmgqvpatydelfqyakannkpdeqkygvlfeannfyytyflfaakgaavfkeqdgtl
dpneiglnspeavqgmnevqkwftearlpqslkadtvnglfksgkvaavingpwaikdyq
aaginvgvaplpkidgkdaqtfigvkgwylsayskypkyatelmqfltskealasrfket
geippqkellndpmiknnpvvngfakqaskgvpmpsipemgvvwepinnahtfvaqgkqt
peqalndavkimkekiqtmkq

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2dfzB (B:)
kpdklvvwenaddgvqlnntkkwageftkktgiqvevvpvallkqqekltldgpagkgad
lvtwphdrlgeavtkgllqpiqvdnsvknqfddvamkaltyggklyglpkaiesvaliyn
kklmgqvpatydelfqyakannkpdeqkygvlfeannfyytyflfaakgaavfkeqdgtl
dpneiglnspeavqgmnevqkwftearlpqslkadtvnglfksgkvaavingpwaikdyq
aaginvgvaplpkidgkdaqtfigvkgwylsayskypkyatelmqfltskealasrfket
geippqkellndpmiknnpvvngfakqaskgvpmpsipemgvvwepinnahtfvaqgkqt
peqalndavkimkekiqtmkq

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2dfzC (C:)
kpdklvvwenaddgvqlnntkkwageftkktgiqvevvpvallkqqekltldgpagkgad
lvtwphdrlgeavtkgllqpiqvdnsvknqfddvamkaltyggklyglpkaiesvaliyn
kklmgqvpatydelfqyakannkpdeqkygvlfeannfyytyflfaakgaavfkeqdgtl
dpneiglnspeavqgmnevqkwftearlpqslkadtvnglfksgkvaavingpwaikdyq
aaginvgvaplpkidgkdaqtfigvkgwylsayskypkyatelmqfltskealasrfket
geippqkellndpmiknnpvvngfakqaskgvpmpsipemgvvwepinnahtfvaqgkqt
peqalndavkimkekiqtmkq

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2dfzD (D:)
kpdklvvwenaddgvqlnntkkwageftkktgiqvevvpvallkqqekltldgpagkgad
lvtwphdrlgeavtkgllqpiqvdnsvknqfddvamkaltyggklyglpkaiesvaliyn
kklmgqvpatydelfqyakannkpdeqkygvlfeannfyytyflfaakgaavfkeqdgtl
dpneiglnspeavqgmnevqkwftearlpqslkadtvnglfksgkvaavingpwaikdyq
aaginvgvaplpkidgkdaqtfigvkgwylsayskypkyatelmqfltskealasrfket
geippqkellndpmiknnpvvngfakqaskgvpmpsipemgvvwepinnahtfvaqgkqt
peqalndavkimkekiqtmkq