PDB entry 2ddr

View 2ddr on RCSB PDB site
Description: Crystal structure of sphingomyelinase from Bacillus cereus with calcium ion
Class: hydrolase
Keywords: DNase I like folding, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, HYDROLASE
Deposited on 2006-02-02, released 2006-05-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 1.4 Å
R-factor: 0.213
AEROSPACI score: 0.65 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Sphingomyelin phosphodiesterase
    Species: Bacillus cereus [TaxId:1396]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2ddra1
  • Chain 'B':
    Compound: Sphingomyelin phosphodiesterase
    Species: Bacillus cereus [TaxId:1396]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2ddrb_
  • Chain 'C':
    Compound: Sphingomyelin phosphodiesterase
    Species: Bacillus cereus [TaxId:1396]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2ddrc_
  • Chain 'D':
    Compound: Sphingomyelin phosphodiesterase
    Species: Bacillus cereus [TaxId:1396]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2ddrd_
  • Heterogens: CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2ddrA (A:)
evsttqndtlkvmthnvymlstnlypnwgqteradligaadyiknqdvvilnevfdnsas
drllgnlkkeypnqtavlgrssgsewdktlgnyssstpedggvaivskwpiaekiqyvfa
kgcgpdnlsnkgfvytkikkndrfvhvigthlqaedsmcgktspasvrtnqlkeiqdfik
nknipnneyvliggdmnvnkinaennndseyasmfktlnasvpsytghtatwdattnsia
kynfpdspaeyldyiiaskdhanpsyienkvlqpkspqwtvtswfqkytyndysdhypve
atismk

    Sequence, based on observed residues (ATOM records): (download) 
    >2ddrA (A:)
ndtlkvmthnvymlstnlypnwgqteradligaadyiknqdvvilnevfdnsasdrllgn
lkkeypnqtavlgrssgsewdktlgnyssstpedggvaivskwpiaekiqyvfakgclsn
kgfvytkikkndrfvhvigthlqaespasvrtnqlkeiqdfiknknipnneyvliggdmn
vnkinaennndseyasmfktlnasvpsytghtatwdattnsiakynfpdspaeyldyiia
skdhanpsyienkvlqpkspqwtvtswfqkytyndysdhypveatism

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2ddrB (B:)
evsttqndtlkvmthnvymlstnlypnwgqteradligaadyiknqdvvilnevfdnsas
drllgnlkkeypnqtavlgrssgsewdktlgnyssstpedggvaivskwpiaekiqyvfa
kgcgpdnlsnkgfvytkikkndrfvhvigthlqaedsmcgktspasvrtnqlkeiqdfik
nknipnneyvliggdmnvnkinaennndseyasmfktlnasvpsytghtatwdattnsia
kynfpdspaeyldyiiaskdhanpsyienkvlqpkspqwtvtswfqkytyndysdhypve
atismk

    Sequence, based on observed residues (ATOM records): (download) 
    >2ddrB (B:)
ndtlkvmthnvymlstnlypnwgqteradligaadyiknqdvvilnevfdnsasdrllgn
lkkeypnqtavlgrssgsewdktlgnyssstpedggvaivskwpiaekiqyvfakgcnls
nkgfvytkikkndrfvhvigthlqaespasvrtnqlkeiqdfiknknipnneyvliggdm
nvnkinaennndseyasmfktlnasvpsytghtatwdattnsiakynfpdspaeyldyii
askdhanpsyienkvlqpkspqwtvtswfqkytyndysdhypveatism

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2ddrC (C:)
evsttqndtlkvmthnvymlstnlypnwgqteradligaadyiknqdvvilnevfdnsas
drllgnlkkeypnqtavlgrssgsewdktlgnyssstpedggvaivskwpiaekiqyvfa
kgcgpdnlsnkgfvytkikkndrfvhvigthlqaedsmcgktspasvrtnqlkeiqdfik
nknipnneyvliggdmnvnkinaennndseyasmfktlnasvpsytghtatwdattnsia
kynfpdspaeyldyiiaskdhanpsyienkvlqpkspqwtvtswfqkytyndysdhypve
atismk

    Sequence, based on observed residues (ATOM records): (download) 
    >2ddrC (C:)
dtlkvmthnvymlstnlypnwgqteradligaadyiknqdvvilnevfdnsasdrllgnl
kkeypnqtavlgrssgsewdktlgnyssstpedggvaivskwpiaekiqyvfakgcgpdn
lsnkgfvytkikkndrfvhvigthlqaedsmcgktspasvrtnqlkeiqdfiknknipnn
eyvliggdmnvnkinaennndseyasmfktlnasvpsytghtatwdattnsiakynfpds
paeyldyiiaskdhanpsyienkvlqpkspqwtvtswfqkytyndysdhypveatism

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2ddrD (D:)
evsttqndtlkvmthnvymlstnlypnwgqteradligaadyiknqdvvilnevfdnsas
drllgnlkkeypnqtavlgrssgsewdktlgnyssstpedggvaivskwpiaekiqyvfa
kgcgpdnlsnkgfvytkikkndrfvhvigthlqaedsmcgktspasvrtnqlkeiqdfik
nknipnneyvliggdmnvnkinaennndseyasmfktlnasvpsytghtatwdattnsia
kynfpdspaeyldyiiaskdhanpsyienkvlqpkspqwtvtswfqkytyndysdhypve
atismk

    Sequence, based on observed residues (ATOM records): (download) 
    >2ddrD (D:)
dtlkvmthnvymlstnlypnwgqteradligaadyiknqdvvilnevfdnsasdrllgnl
kkeypnqtavlgrssgsewdktlgnyssstpedggvaivskwpiaekiqyvfakgcgpdn
lsnkgfvytkikkndrfvhvigthlqaedsmcgktspasvrtnqlkeiqdfiknknipnn
eyvliggdmnvnkinaennndseyasmfktlnasvpsytghtatwdattnsiakynfpds
paeyldyiiaskdhanpsyienkvlqpkspqwtvtswfqkytyndysdhypveatism