PDB entry 2dbv

View 2dbv on RCSB PDB site
Description: glyceraldehyde-3-phosphate dehydrogenase mutant with asp 32 replaced by gly, leu 187 replaced by ala, and pro 188 replaced by ser complexed with nadp+
Class: oxidoreductase
Keywords: oxidoreductase, nad(p) selectivity
Deposited on 1996-12-19, released 1997-07-07
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.195
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'O':
    Compound: glyceraldehyde-3-phosphate dehydrogenase
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Gene: GAP
    Database cross-references and differences (RAF-indexed):
    • Uniprot P00362 (0-333)
      • engineered (32)
      • engineered (188-189)
    Domains in SCOPe 2.08: d2dbvo1, d2dbvo2
  • Chain 'P':
    Compound: glyceraldehyde-3-phosphate dehydrogenase
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Gene: GAP
    Database cross-references and differences (RAF-indexed):
    • Uniprot P00362 (0-333)
      • engineered (32)
      • engineered (188-189)
    Domains in SCOPe 2.08: d2dbvp1, d2dbvp2
  • Chain 'Q':
    Compound: glyceraldehyde-3-phosphate dehydrogenase
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Gene: GAP
    Database cross-references and differences (RAF-indexed):
    • Uniprot P00362 (0-333)
      • engineered (32)
      • engineered (188-189)
    Domains in SCOPe 2.08: d2dbvq1, d2dbvq2
  • Chain 'R':
    Compound: glyceraldehyde-3-phosphate dehydrogenase
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Gene: GAP
    Database cross-references and differences (RAF-indexed):
    • Uniprot P00362 (0-333)
      • engineered (32)
      • engineered (188-189)
    Domains in SCOPe 2.08: d2dbvr1, d2dbvr2
  • Heterogens: SO4, NDP, HOH

PDB Chain Sequences:

  • Chain 'O':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2dbvO (O:)
avkvgingfgrigrnvfraalknpdievvavngltdantlahllkydsvhgrldaevsvn
gnnlvvngkeiivkaerdpenlawgeigvdivvestgrftkredaakhleagakkviisa
pakneditivmgvnqdkydpkahhvisnascttnclapfakvlheqfgivrgmmttvhsy
tndqrildashkdlrraraaaesiiptttgaakavalvlpelkgklngmamrvptpnvsv
vdlvaelekevtveevnaalkaaaegelkgilayseeplvsrdyngstvsstidalstmv
idgkmvkvvswydnetgyshrvvdlaayiaskgl

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2dbvP (P:)
avkvgingfgrigrnvfraalknpdievvavngltdantlahllkydsvhgrldaevsvn
gnnlvvngkeiivkaerdpenlawgeigvdivvestgrftkredaakhleagakkviisa
pakneditivmgvnqdkydpkahhvisnascttnclapfakvlheqfgivrgmmttvhsy
tndqrildashkdlrraraaaesiiptttgaakavalvlpelkgklngmamrvptpnvsv
vdlvaelekevtveevnaalkaaaegelkgilayseeplvsrdyngstvsstidalstmv
idgkmvkvvswydnetgyshrvvdlaayiaskgl

  • Chain 'Q':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2dbvQ (Q:)
avkvgingfgrigrnvfraalknpdievvavngltdantlahllkydsvhgrldaevsvn
gnnlvvngkeiivkaerdpenlawgeigvdivvestgrftkredaakhleagakkviisa
pakneditivmgvnqdkydpkahhvisnascttnclapfakvlheqfgivrgmmttvhsy
tndqrildashkdlrraraaaesiiptttgaakavalvlpelkgklngmamrvptpnvsv
vdlvaelekevtveevnaalkaaaegelkgilayseeplvsrdyngstvsstidalstmv
idgkmvkvvswydnetgyshrvvdlaayiaskgl

  • Chain 'R':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2dbvR (R:)
avkvgingfgrigrnvfraalknpdievvavngltdantlahllkydsvhgrldaevsvn
gnnlvvngkeiivkaerdpenlawgeigvdivvestgrftkredaakhleagakkviisa
pakneditivmgvnqdkydpkahhvisnascttnclapfakvlheqfgivrgmmttvhsy
tndqrildashkdlrraraaaesiiptttgaakavalvlpelkgklngmamrvptpnvsv
vdlvaelekevtveevnaalkaaaegelkgilayseeplvsrdyngstvsstidalstmv
idgkmvkvvswydnetgyshrvvdlaayiaskgl