PDB entry 2d5v

View 2d5v on RCSB PDB site
Description: Crystal structure of HNF-6alpha DNA-binding domain in complex with the TTR promoter
Class: transcription/DNA
Keywords: Transcription factor, TRANSCRIPTION-DNA COMPLEX
Deposited on 2005-11-07, released 2006-12-05
The last revision prior to the SCOPe 2.05 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.245
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hepatocyte nuclear factor 6
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d2d5va1, d2d5va2
  • Chain 'B':
    Compound: Hepatocyte nuclear factor 6
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d2d5vb1, d2d5vb2
  • Chain 'C':
    Compound: 5'-d(*tp*cp*tp*ap*ap*gp*tp*cp*ap*ap*tp*ap*ap*t)-3'
  • Chain 'D':
    Compound: 5'-d(*ap*tp*tp*ap*tp*tp*gp*ap*cp*tp*tp*ap*gp*a)-3'
  • Chain 'E':
    Compound: 5'-d(*tp*cp*tp*ap*ap*gp*tp*cp*ap*ap*tp*ap*ap*t)-3'
  • Chain 'F':
    Compound: 5'-d(*ap*tp*tp*ap*tp*tp*gp*ap*cp*tp*tp*ap*gp*a)-3'
  • Heterogens: ACT, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2d5vA (A:)
meeintkevaqrittelkrysipqaifaqrvlcrsqgtlsdllrnpkpwsklksgretfr
rmwkwlqepefqrmsalrlaackrkeqehgkdrgntpkkprlvftdvqrrtlhaifkenk
rpskelqitisqqlglelstvsnffmnarrrsldkwlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2d5vA (A:)
meeintkevaqrittelkrysipqaifaqrvlcrsqgtlsdllrnpkpwsklksgretfr
rmwkwlqepefqrmsalrlprlvftdvqrrtlhaifkenkrpskelqitisqqlglelst
vsnffmnarrrsldk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2d5vB (B:)
meeintkevaqrittelkrysipqaifaqrvlcrsqgtlsdllrnpkpwsklksgretfr
rmwkwlqepefqrmsalrlaackrkeqehgkdrgntpkkprlvftdvqrrtlhaifkenk
rpskelqitisqqlglelstvsnffmnarrrsldkwlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2d5vB (B:)
meeintkevaqrittelkrysipqaifaqrvlcrsqgtlsdllrnpkpwsklksgretfr
rmwkwlqepefqrmsalrlprlvftdvqrrtlhaifkenkrpskelqitisqqlglelst
vsnffmnarrrsldk

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.