PDB entry 2d5k

View 2d5k on RCSB PDB site
Description: Crystal structure of Dps from Staphylococcus aureus
Class: metal binding protein
Keywords: four helix bundle, metal binding protein
Deposited on 2005-11-02, released 2006-10-17
The last revision prior to the SCOPe 2.01 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: 0.19
AEROSPACI score: 0.52 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Dps family protein
    Species: Staphylococcus aureus subsp. aureus [TaxId:93062]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5HE61 (2-147)
      • expression tag (148-149)
    Domains in SCOPe 2.01: d2d5ka_
  • Chain 'B':
    Compound: Dps family protein
    Species: Staphylococcus aureus subsp. aureus [TaxId:93062]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5HE61 (2-147)
      • cloning artifact (1)
      • expression tag (148-149)
    Domains in SCOPe 2.01: d2d5kb_
  • Chain 'C':
    Compound: Dps family protein
    Species: Staphylococcus aureus subsp. aureus [TaxId:93062]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5HE61 (2-147)
      • cloning artifact (1)
    Domains in SCOPe 2.01: d2d5kc_
  • Chain 'D':
    Compound: Dps family protein
    Species: Staphylococcus aureus subsp. aureus [TaxId:93062]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5HE61 (2-147)
      • cloning artifact (1)
    Domains in SCOPe 2.01: d2d5kd_
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2d5kA (A:)
    masnqqdvvkelnqqvanwtvaytklhnfhwyvkgpnffslhvkfeelyneasqyvdela
    erilavggnpvgtltecleqsivkeaakgysaeqmveelsqdftniskqlenaieiagna
    gddvsedmfigmqtsvdkhnwmfksylslehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >2d5kA (A:)
    snqqdvvkelnqqvanwtvaytklhnfhwyvkgpnffslhvkfeelyneasqyvdelaer
    ilavggnpvgtltecleqsivkeaakgysaeqmveelsqdftniskqlenaieiagnagd
    dvsedmfigmqtsvdkhnwmfksylsle
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2d5kB (B:)
    masnqqdvvkelnqqvanwtvaytklhnfhwyvkgpnffslhvkfeelyneasqyvdela
    erilavggnpvgtltecleqsivkeaakgysaeqmveelsqdftniskqlenaieiagna
    gddvsedmfigmqtsvdkhnwmfksylslehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >2d5kB (B:)
    asnqqdvvkelnqqvanwtvaytklhnfhwyvkgpnffslhvkfeelyneasqyvdelae
    rilavggnpvgtltecleqsivkeaakgysaeqmveelsqdftniskqlenaieiagnag
    ddvsedmfigmqtsvdkhnwmfksylsle
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >2d5kC (C:)
    masnqqdvvkelnqqvanwtvaytklhnfhwyvkgpnffslhvkfeelyneasqyvdela
    erilavggnpvgtltecleqsivkeaakgysaeqmveelsqdftniskqlenaieiagna
    gddvsedmfigmqtsvdkhnwmfksylslehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >2d5kC (C:)
    asnqqdvvkelnqqvanwtvaytklhnfhwyvkgpnffslhvkfeelyneasqyvdelae
    rilavggnpvgtltecleqsivkeaakgysaeqmveelsqdftniskqlenaieiagnag
    ddvsedmfigmqtsvdkhnwmfksyls
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >2d5kD (D:)
    masnqqdvvkelnqqvanwtvaytklhnfhwyvkgpnffslhvkfeelyneasqyvdela
    erilavggnpvgtltecleqsivkeaakgysaeqmveelsqdftniskqlenaieiagna
    gddvsedmfigmqtsvdkhnwmfksylslehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >2d5kD (D:)
    asnqqdvvkelnqqvanwtvaytklhnfhwyvkgpnffslhvkfeelyneasqyvdelae
    rilavggnpvgtltecleqsivkeaakgysaeqmveelsqdftniskqlenaieiagnag
    ddvsedmfigmqtsvdkhnwmfksyls