PDB entry 2d5k
View 2d5k on RCSB PDB site
Description: Crystal structure of Dps from Staphylococcus aureus
Class: metal binding protein
Keywords: four helix bundle, metal binding protein
Deposited on
2005-11-02, released
2006-10-17
The last revision prior to the SCOPe 2.08 freeze date was dated
2018-02-14, with a file datestamp of
2018-02-09.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: N/A
AEROSPACI score: 0.37
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Dps family protein
Species: Staphylococcus aureus [TaxId:93062]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2d5ka1, d2d5ka2 - Chain 'B':
Compound: Dps family protein
Species: Staphylococcus aureus [TaxId:93062]
Database cross-references and differences (RAF-indexed):
- Uniprot Q5HE61 (2-147)
- cloning artifact (1)
- expression tag (148-149)
Domains in SCOPe 2.08: d2d5kb1, d2d5kb2, d2d5kb3 - Chain 'C':
Compound: Dps family protein
Species: Staphylococcus aureus [TaxId:93062]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2d5kc1, d2d5kc2 - Chain 'D':
Compound: Dps family protein
Species: Staphylococcus aureus [TaxId:93062]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2d5kd1, d2d5kd2 - Heterogens: GOL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2d5kA (A:)
masnqqdvvkelnqqvanwtvaytklhnfhwyvkgpnffslhvkfeelyneasqyvdela
erilavggnpvgtltecleqsivkeaakgysaeqmveelsqdftniskqlenaieiagna
gddvsedmfigmqtsvdkhnwmfksylslehhhhhh
Sequence, based on observed residues (ATOM records): (download)
>2d5kA (A:)
snqqdvvkelnqqvanwtvaytklhnfhwyvkgpnffslhvkfeelyneasqyvdelaer
ilavggnpvgtltecleqsivkeaakgysaeqmveelsqdftniskqlenaieiagnagd
dvsedmfigmqtsvdkhnwmfksylsle
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2d5kB (B:)
masnqqdvvkelnqqvanwtvaytklhnfhwyvkgpnffslhvkfeelyneasqyvdela
erilavggnpvgtltecleqsivkeaakgysaeqmveelsqdftniskqlenaieiagna
gddvsedmfigmqtsvdkhnwmfksylslehhhhhh
Sequence, based on observed residues (ATOM records): (download)
>2d5kB (B:)
asnqqdvvkelnqqvanwtvaytklhnfhwyvkgpnffslhvkfeelyneasqyvdelae
rilavggnpvgtltecleqsivkeaakgysaeqmveelsqdftniskqlenaieiagnag
ddvsedmfigmqtsvdkhnwmfksylsle
- Chain 'C':
Sequence, based on SEQRES records: (download)
>2d5kC (C:)
masnqqdvvkelnqqvanwtvaytklhnfhwyvkgpnffslhvkfeelyneasqyvdela
erilavggnpvgtltecleqsivkeaakgysaeqmveelsqdftniskqlenaieiagna
gddvsedmfigmqtsvdkhnwmfksylslehhhhhh
Sequence, based on observed residues (ATOM records): (download)
>2d5kC (C:)
asnqqdvvkelnqqvanwtvaytklhnfhwyvkgpnffslhvkfeelyneasqyvdelae
rilavggnpvgtltecleqsivkeaakgysaeqmveelsqdftniskqlenaieiagnag
ddvsedmfigmqtsvdkhnwmfksyls
- Chain 'D':
Sequence, based on SEQRES records: (download)
>2d5kD (D:)
masnqqdvvkelnqqvanwtvaytklhnfhwyvkgpnffslhvkfeelyneasqyvdela
erilavggnpvgtltecleqsivkeaakgysaeqmveelsqdftniskqlenaieiagna
gddvsedmfigmqtsvdkhnwmfksylslehhhhhh
Sequence, based on observed residues (ATOM records): (download)
>2d5kD (D:)
asnqqdvvkelnqqvanwtvaytklhnfhwyvkgpnffslhvkfeelyneasqyvdelae
rilavggnpvgtltecleqsivkeaakgysaeqmveelsqdftniskqlenaieiagnag
ddvsedmfigmqtsvdkhnwmfksyls