PDB entry 2d40

View 2d40 on RCSB PDB site
Description: Crystal Structure of Z3393 from Escherichia coli O157:H7
Class: oxidoreductase
Keywords: Gentisic Acid, 1, 2-dioxygenase, bicupin, tetramer, Montreal-Kingston Bacterial Structural Genomics Initiative, BSGI, Structural Genomics, OXIDOREDUCTASE
Deposited on 2005-10-05, released 2006-09-26
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-10-11, with a file datestamp of 2017-10-06.
Experiment type: XRAY
Resolution: 2.41 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: putative gentisate 1,2-dioxygenase
    Species: Escherichia coli [TaxId:83334]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8X655 (Start-353)
      • modified residue (107)
      • modified residue (142)
      • modified residue (210)
      • modified residue (252)
      • modified residue (264)
      • modified residue (267)
    Domains in SCOPe 2.08: d2d40a1
  • Chain 'B':
    Compound: putative gentisate 1,2-dioxygenase
    Species: Escherichia coli [TaxId:83334]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8X655
      • modified residue (107)
      • modified residue (142)
      • modified residue (210)
      • modified residue (252)
      • modified residue (264)
      • modified residue (267)
    Domains in SCOPe 2.08: d2d40b_
  • Chain 'C':
    Compound: putative gentisate 1,2-dioxygenase
    Species: Escherichia coli [TaxId:83334]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8X655 (Start-353)
      • modified residue (107)
      • modified residue (142)
      • modified residue (210)
      • modified residue (252)
      • modified residue (264)
      • modified residue (267)
    Domains in SCOPe 2.08: d2d40c_
  • Chain 'D':
    Compound: putative gentisate 1,2-dioxygenase
    Species: Escherichia coli [TaxId:83334]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8X655 (Start-353)
      • modified residue (107)
      • modified residue (142)
      • modified residue (210)
      • modified residue (252)
      • modified residue (264)
      • modified residue (267)
    Domains in SCOPe 2.08: d2d40d_
  • Heterogens: FE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2d40A (A:)
mgsshhhhhhgsmtdnnqnsreqfyqhisgqnltplweslhhlvpktpnancapaywnyq
eirplllesggligakeavrrvlvlenpalrgqssitatlyaglqlimpgevapshrhnq
salrfivegkgaftavdgertpmnegdfiltpqwrwhdhgnpgdepviwldgldlplvni
lgcgfaedypeeqqpvtrkegdylpryaanmlplrhqtgnsspifnyrydrsrevlhdlt
rlgdadewdgykmryvnpvtggypmpsmgaflqllpkgfasrvarttdstiyhvvegsgq
viignetfsfsakdifvvptwhgvsfqttqdsvlfsfsdrpvqealglfreary

    Sequence, based on observed residues (ATOM records): (download) 
    >2d40A (A:)
tpnancapaywnyqeirpllvlenpalrgqssitatlyaglqlimpgevapshrhnqsal
rfivegkgaftavdgertpmnegdfiltpqwrwhdhgnpgdepviwldgldlplvnilgc
gfaedypqqpvtrkegdylpryaanmlplrhqtgnsspifnyrydrsrevlhdltrlgda
dewdgykmryvnpvtggypmpsmgaflqllpkgfasrvarttdstiyhvvegsgqviign
etfsfsakdifvvptwhgvsfqttqdsvlfsfsdrpvqealglfreary

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2d40B (B:)
mgsshhhhhhgsmtdnnqnsreqfyqhisgqnltplweslhhlvpktpnancapaywnyq
eirplllesggligakeavrrvlvlenpalrgqssitatlyaglqlimpgevapshrhnq
salrfivegkgaftavdgertpmnegdfiltpqwrwhdhgnpgdepviwldgldlplvni
lgcgfaedypeeqqpvtrkegdylpryaanmlplrhqtgnsspifnyrydrsrevlhdlt
rlgdadewdgykmryvnpvtggypmpsmgaflqllpkgfasrvarttdstiyhvvegsgq
viignetfsfsakdifvvptwhgvsfqttqdsvlfsfsdrpvqealglfreary

    Sequence, based on observed residues (ATOM records): (download) 
    >2d40B (B:)
pnancapaywnyqeirplvlenpalrgqssitatlyaglqlimpgevapshrhnqsalrf
ivegkgaftavdgertpmnegdfiltpqwrwhdhgnpgdepviwldgldlplvnilgcgf
aedyppvtrkegdylpryaanmlplrhqtgnsspifnyrydrsrevlhdltrlgdadewd
gykmryvnpvtggypmpsmgaflqllpkgfasrvarttdstiyhvvegsgqviignetfs
fsakdifvvptwhgvsfqttqdsvlfsfsdrpvqealglfrear

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2d40C (C:)
mgsshhhhhhgsmtdnnqnsreqfyqhisgqnltplweslhhlvpktpnancapaywnyq
eirplllesggligakeavrrvlvlenpalrgqssitatlyaglqlimpgevapshrhnq
salrfivegkgaftavdgertpmnegdfiltpqwrwhdhgnpgdepviwldgldlplvni
lgcgfaedypeeqqpvtrkegdylpryaanmlplrhqtgnsspifnyrydrsrevlhdlt
rlgdadewdgykmryvnpvtggypmpsmgaflqllpkgfasrvarttdstiyhvvegsgq
viignetfsfsakdifvvptwhgvsfqttqdsvlfsfsdrpvqealglfreary

    Sequence, based on observed residues (ATOM records): (download) 
    >2d40C (C:)
pktpnancapaywnyqeirlvlenpalrgqssitatlyaglqlimpgevapshrhnqsal
rfivegkgaftavdgertpmnegdfiltpqwrwhdhgnpgdepviwldgldlplvnilgc
gfaedypeqpvtrkegdylpryaanmlplrhqtgnsspifnyrydrsrevlhdltrlgda
dewdgykmryvnpvtggypmpsmgaflqllpkgfasrvarttdstiyhvvegsgqviign
etfsfsakdifvvptwhgvsfqttqdsvlfsfsdrpvqealglfreary

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2d40D (D:)
mgsshhhhhhgsmtdnnqnsreqfyqhisgqnltplweslhhlvpktpnancapaywnyq
eirplllesggligakeavrrvlvlenpalrgqssitatlyaglqlimpgevapshrhnq
salrfivegkgaftavdgertpmnegdfiltpqwrwhdhgnpgdepviwldgldlplvni
lgcgfaedypeeqqpvtrkegdylpryaanmlplrhqtgnsspifnyrydrsrevlhdlt
rlgdadewdgykmryvnpvtggypmpsmgaflqllpkgfasrvarttdstiyhvvegsgq
viignetfsfsakdifvvptwhgvsfqttqdsvlfsfsdrpvqealglfreary

    Sequence, based on observed residues (ATOM records): (download) 
    >2d40D (D:)
pktpnancapaywnyqeirlvlenpalrgqssitatlyaglqlimpgevapshrhnqsal
rfivegkgaftavdgertpmnegdfiltpqwrwhdhgnpgdepviwldgldlplvnilgc
gfaedyppvtrkegdylpryaanmlplrhqtgnsspifnyrydrsrevlhdltrlgdade
wdgykmryvnpvtggypmpsmgaflqllpkgfasrvarttdstiyhvvegsgqviignet
fsfsakdifvvptwhgvsfqttqdsvlfsfsdrpvqealglfreary