PDB entry 2d1p

View 2d1p on RCSB PDB site
Description: crystal structure of heterohexameric TusBCD proteins, which are crucial for the tRNA modification
Class: translation
Keywords: tRNA modification, sulfur transfer, Structural genomics
Deposited on 2005-08-30, released 2006-02-28
The last revision prior to the SCOP 1.73 freeze date was dated 2006-02-28, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: 0.209
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hypothetical UPF0163 protein yheN
    Species: Escherichia coli
    Gene: yheN
    Database cross-references and differences (RAF-indexed):
    • Uniprot P45532 (12-139)
      • his tag (10-11)
    Domains in SCOP 1.73: d2d1pa1
  • Chain 'B':
    Compound: Hypothetical UPF0116 protein yheM
    Species: Escherichia coli
    Gene: yheM
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2d1pb1
  • Chain 'C':
    Compound: Hypothetical protein yheL
    Species: Escherichia coli
    Gene: yheL
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2d1pc1
  • Chain 'D':
    Compound: Hypothetical UPF0163 protein yheN
    Species: Escherichia coli
    Gene: yheN
    Database cross-references and differences (RAF-indexed):
    • Uniprot P45532 (12-139)
      • his tag (10-11)
    Domains in SCOP 1.73: d2d1pd1
  • Chain 'E':
    Compound: Hypothetical UPF0116 protein yheM
    Species: Escherichia coli
    Gene: yheM
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2d1pe1
  • Chain 'F':
    Compound: Hypothetical protein yheL
    Species: Escherichia coli
    Gene: yheL
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2d1pf1
  • Chain 'G':
    Compound: Hypothetical UPF0163 protein yheN
    Species: Escherichia coli
    Gene: yheN
    Database cross-references and differences (RAF-indexed):
    • Uniprot P45532 (12-139)
      • his tag (10-11)
    Domains in SCOP 1.73: d2d1pg1
  • Chain 'H':
    Compound: Hypothetical UPF0116 protein yheM
    Species: Escherichia coli
    Gene: yheM
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2d1ph1
  • Chain 'I':
    Compound: Hypothetical protein yheL
    Species: Escherichia coli
    Gene: yheL
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2d1pi1
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2d1pA (A:)
mrgshhhhhhgsmrfaivvtgpaygtqqassafqfaqaliadghelssvffyregvynan
qltspasdefdlvrawqqlnaqhgvalnicvaaalrrgvvdeteagrlglassnlqqgft
lsglgalaeasltcdrvvqf

    Sequence, based on observed residues (ATOM records): (download) 
    >2d1pA (A:)
gsmrfaivvtgpaygtqqassafqfaqaliadghelssvffyregvynanqltspasdef
dlvrawqqlnaqhgvalnicvaaalrrgvvdeteagrlglassnlqqgftlsglgalaea
sltcdrvvqf

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2d1pB (B:)
mkriafvfstaphgtaagregldallatsaltddlavffiadgvfqllpgqkpdavlard
yiatfkllglydieqcwvcaaslrergldpqtpfvveatpleadalrrelanydvilrf

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2d1pC (C:)
mlhtlhrspwltdfaallrllsegdellllqdgvtaavdgnryleslrnapikvyalned
liargltgqisndiilidytdfvrltvkhpsqmaw

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2d1pD (D:)
mrgshhhhhhgsmrfaivvtgpaygtqqassafqfaqaliadghelssvffyregvynan
qltspasdefdlvrawqqlnaqhgvalnicvaaalrrgvvdeteagrlglassnlqqgft
lsglgalaeasltcdrvvqf

    Sequence, based on observed residues (ATOM records): (download) 
    >2d1pD (D:)
gsmrfaivvtgpaygtqqassafqfaqaliadghelssvffyregvynanqltspasdef
dlvrawqqlnaqhgvalnicvaaalrrgvvdeteagrlglassnlqqgftlsglgalaea
sltcdrvvqf

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2d1pE (E:)
mkriafvfstaphgtaagregldallatsaltddlavffiadgvfqllpgqkpdavlard
yiatfkllglydieqcwvcaaslrergldpqtpfvveatpleadalrrelanydvilrf

    Sequence, based on observed residues (ATOM records): (download) 
    >2d1pE (E:)
kriafvfstaphgtaagregldallatsaltddlavffiadgvfqllpgqkpdavlardy
iatfkllglydieqcwvcaaslrergldpqtpfvveatpleadalrrelanydvilrf

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2d1pF (F:)
mlhtlhrspwltdfaallrllsegdellllqdgvtaavdgnryleslrnapikvyalned
liargltgqisndiilidytdfvrltvkhpsqmaw

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >2d1pG (G:)
mrgshhhhhhgsmrfaivvtgpaygtqqassafqfaqaliadghelssvffyregvynan
qltspasdefdlvrawqqlnaqhgvalnicvaaalrrgvvdeteagrlglassnlqqgft
lsglgalaeasltcdrvvqf

    Sequence, based on observed residues (ATOM records): (download) 
    >2d1pG (G:)
gsmrfaivvtgpaygtqqassafqfaqaliadghelssvffyregvynanqltspasdef
dlvrawqqlnaqhgvalnicvaaalrrgvvdeteagrlglassnlqqgftlsglgalaea
sltcdrvvqf

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >2d1pH (H:)
mkriafvfstaphgtaagregldallatsaltddlavffiadgvfqllpgqkpdavlard
yiatfkllglydieqcwvcaaslrergldpqtpfvveatpleadalrrelanydvilrf

    Sequence, based on observed residues (ATOM records): (download) 
    >2d1pH (H:)
kriafvfstaphgtaagregldallatsaltddlavffiadgvfqllpgqkpdavlardy
iatfkllglydieqcwvcaaslrergldpqtpfvveatpleadalrrelanydvilrf

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2d1pI (I:)
mlhtlhrspwltdfaallrllsegdellllqdgvtaavdgnryleslrnapikvyalned
liargltgqisndiilidytdfvrltvkhpsqmaw