PDB entry 2cv4

View 2cv4 on RCSB PDB site
Description: Crystal Structure of an Archaeal Peroxiredoxin from the Aerobic Hyperthermophilic Crenarchaeon Aeropyrum pernix K1
Class: oxygen storage/transport
Keywords: thioredoxin peroxidase, thioredoxin fold, reactive oxigen scavenging system, cysteine sulfonic acid, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, OXYGEN STORAGE-TRANSPORT COMPLEX
Deposited on 2005-05-31, released 2005-06-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.178
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: peroxiredoxin
    Species: Aeropyrum pernix [TaxId:272557]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Y9L0
      • modified residue (14)
      • modified residue (49)
      • modified residue (139)
      • modified residue (144)
      • modified residue (199)
    Domains in SCOPe 2.08: d2cv4a1
  • Chain 'B':
    Compound: peroxiredoxin
    Species: Aeropyrum pernix [TaxId:272557]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Y9L0
      • modified residue (14)
      • modified residue (49)
      • modified residue (139)
      • modified residue (144)
      • modified residue (199)
    Domains in SCOPe 2.08: d2cv4b_
  • Chain 'C':
    Compound: peroxiredoxin
    Species: Aeropyrum pernix [TaxId:272557]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Y9L0
      • modified residue (14)
      • modified residue (49)
      • modified residue (139)
      • modified residue (144)
      • modified residue (199)
    Domains in SCOPe 2.08: d2cv4c_
  • Chain 'D':
    Compound: peroxiredoxin
    Species: Aeropyrum pernix [TaxId:272557]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Y9L0
      • modified residue (14)
      • modified residue (49)
      • modified residue (139)
      • modified residue (144)
      • modified residue (199)
    Domains in SCOPe 2.08: d2cv4d_
  • Chain 'E':
    Compound: peroxiredoxin
    Species: Aeropyrum pernix [TaxId:272557]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Y9L0
      • modified residue (14)
      • modified residue (49)
      • modified residue (139)
      • modified residue (144)
      • modified residue (199)
    Domains in SCOPe 2.08: d2cv4e_
  • Chain 'F':
    Compound: peroxiredoxin
    Species: Aeropyrum pernix [TaxId:272557]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Y9L0
      • modified residue (14)
      • modified residue (49)
      • modified residue (139)
      • modified residue (144)
      • modified residue (199)
    Domains in SCOPe 2.08: d2cv4f_
  • Chain 'G':
    Compound: peroxiredoxin
    Species: Aeropyrum pernix [TaxId:272557]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Y9L0
      • modified residue (14)
      • modified residue (49)
      • modified residue (139)
      • modified residue (144)
      • modified residue (199)
    Domains in SCOPe 2.08: d2cv4g_
  • Chain 'H':
    Compound: peroxiredoxin
    Species: Aeropyrum pernix [TaxId:272557]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Y9L0
      • modified residue (14)
      • modified residue (49)
      • modified residue (139)
      • modified residue (144)
      • modified residue (199)
    Domains in SCOPe 2.08: d2cv4h_
  • Chain 'I':
    Compound: peroxiredoxin
    Species: Aeropyrum pernix [TaxId:272557]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Y9L0
      • modified residue (14)
      • modified residue (49)
      • modified residue (139)
      • modified residue (144)
      • modified residue (199)
    Domains in SCOPe 2.08: d2cv4i_
  • Chain 'J':
    Compound: peroxiredoxin
    Species: Aeropyrum pernix [TaxId:272557]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9Y9L0
      • modified residue (14)
      • modified residue (49)
      • modified residue (139)
      • modified residue (144)
      • modified residue (199)
    Domains in SCOPe 2.08: d2cv4j_
  • Heterogens: MES, IPA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2cv4A (A:)
    mpgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvcttefvsfarr
    yedfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaes
    athtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnnei
    igeglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakl
    lyeearthlh
    

    Sequence, based on observed residues (ATOM records): (download)
    >2cv4A (A:)
    pgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvcttefvsfarry
    edfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaesa
    thtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnneii
    geglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakll
    y
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2cv4B (B:)
    mpgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvcttefvsfarr
    yedfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaes
    athtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnnei
    igeglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakl
    lyeearthlh
    

    Sequence, based on observed residues (ATOM records): (download)
    >2cv4B (B:)
    pgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvcttefvsfarry
    edfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaesa
    thtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnneii
    geglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakll
    y
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >2cv4C (C:)
    mpgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvcttefvsfarr
    yedfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaes
    athtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnnei
    igeglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakl
    lyeearthlh
    

    Sequence, based on observed residues (ATOM records): (download)
    >2cv4C (C:)
    pgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvcttefvsfarry
    edfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaesa
    thtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnneii
    geglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakll
    y
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >2cv4D (D:)
    mpgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvcttefvsfarr
    yedfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaes
    athtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnnei
    igeglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakl
    lyeearthlh
    

    Sequence, based on observed residues (ATOM records): (download)
    >2cv4D (D:)
    pgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvcttefvsfarry
    edfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaesa
    thtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnneii
    geglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakll
    ye
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >2cv4E (E:)
    mpgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvcttefvsfarr
    yedfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaes
    athtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnnei
    igeglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakl
    lyeearthlh
    

    Sequence, based on observed residues (ATOM records): (download)
    >2cv4E (E:)
    pgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvcttefvsfarry
    edfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaesa
    thtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnneii
    geglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakll
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >2cv4F (F:)
    mpgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvcttefvsfarr
    yedfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaes
    athtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnnei
    igeglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakl
    lyeearthlh
    

    Sequence, based on observed residues (ATOM records): (download)
    >2cv4F (F:)
    pgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvcttefvsfarry
    edfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaesa
    thtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnneii
    geglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakll
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >2cv4G (G:)
    mpgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvcttefvsfarr
    yedfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaes
    athtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnnei
    igeglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakl
    lyeearthlh
    

    Sequence, based on observed residues (ATOM records): (download)
    >2cv4G (G:)
    pgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvcttefvsfarry
    edfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaesa
    thtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnneii
    geglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakll
    ye
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >2cv4H (H:)
    mpgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvcttefvsfarr
    yedfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaes
    athtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnnei
    igeglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakl
    lyeearthlh
    

    Sequence, based on observed residues (ATOM records): (download)
    >2cv4H (H:)
    pgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvcttefvsfarry
    edfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaesa
    thtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnneii
    geglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakll
    

  • Chain 'I':
    Sequence, based on SEQRES records: (download)
    >2cv4I (I:)
    mpgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvcttefvsfarr
    yedfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaes
    athtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnnei
    igeglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakl
    lyeearthlh
    

    Sequence, based on observed residues (ATOM records): (download)
    >2cv4I (I:)
    pgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvcttefvsfarry
    edfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaesa
    thtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnneii
    geglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakll
    y
    

  • Chain 'J':
    Sequence, based on SEQRES records: (download)
    >2cv4J (J:)
    mpgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvcttefvsfarr
    yedfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaes
    athtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnnei
    igeglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakl
    lyeearthlh
    

    Sequence, based on observed residues (ATOM records): (download)
    >2cv4J (J:)
    pgsipligerfpemevttdhgviklpdhyvsqgkwfvlfshpadftpvcttefvsfarry
    edfqrlgvdliglsvdsvfshikwkewierhigvripfpiiadpqgtvarrlgllhaesa
    thtvrgvfivdargvirtmlyypmelgrlvdeilrivkalklgdslkravpadwpnneii
    geglivpppttedqararmesgqyrcldwwfcwdtpasrddveearrylrraaekpakll