PDB entry 2cse

View 2cse on RCSB PDB site
Description: Features of Reovirus Outer-Capsid Protein mu1 Revealed by Electron and Image Reconstruction of the virion at 7.0-A Resolution
Class: Virus
Keywords: cryoEM, image processing, reovirus, membrane penetration protein, Icosahedral virus
Deposited on 2005-05-21, released 2005-10-18
The last revision prior to the SCOP 1.75 freeze date was dated 2005-10-18, with a file datestamp of 2007-06-28.
Experiment type: EM
Resolution: 7 Å
R-factor: N/A
AEROSPACI score: -0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: Minor core protein lambda 3
    Species: Reovirus type 1
    Database cross-references and differences (RAF-indexed):
  • Chain 'A':
    Compound: major outer-capsid protein mu1
    Species: Reovirus type 1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11077
      • conflict (343)
      • conflict (358)
  • Chain 'B':
    Compound: major outer-capsid protein mu1
    Species: Reovirus type 1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11077
      • conflict (343)
      • conflict (358)
  • Chain 'C':
    Compound: major outer-capsid protein mu1
    Species: Reovirus type 1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11077
      • conflict (343)
      • conflict (358)
  • Chain 'D':
    Compound: major capsid surface protein sigma-3
    Species: Reovirus type 1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P07939 (0-364)
      • conflict (103)
      • conflict (324)
    Domains in SCOP 1.75: d2csed1
  • Chain 'E':
    Compound: major capsid surface protein sigma-3
    Species: Reovirus type 1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P07939 (0-364)
      • conflict (103)
      • conflict (324)
    Domains in SCOP 1.75: d2csee1
  • Chain 'F':
    Compound: major capsid surface protein sigma-3
    Species: Reovirus type 1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P07939 (0-364)
      • conflict (103)
      • conflict (324)
    Domains in SCOP 1.75: d2csef1
  • Chain 'G':
    Compound: major capsid surface protein sigma-3
    Species: Reovirus type 1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P07939 (0-364)
      • conflict (103)
      • conflict (324)
    Domains in SCOP 1.75: d2cseg1
  • Chain 'H':
    Compound: major capsid surface protein sigma-3
    Species: Reovirus type 1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P07939 (0-364)
      • conflict (103)
      • conflict (324)
    Domains in SCOP 1.75: d2cseh1
  • Chain 'I':
    Compound: major capsid surface protein sigma-3
    Species: Reovirus type 1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P07939 (0-364)
      • conflict (103)
      • conflict (324)
    Domains in SCOP 1.75: d2csei1
  • Chain 'J':
    Compound: major outer-capsid protein mu1
    Species: Reovirus type 1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11077
      • conflict (343)
      • conflict (358)
  • Chain 'K':
    Compound: major outer-capsid protein mu1
    Species: Reovirus type 1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11077
      • conflict (343)
      • conflict (358)
  • Chain 'L':
    Compound: major outer-capsid protein mu1
    Species: Reovirus type 1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11077
      • conflict (343)
      • conflict (358)
  • Chain 'M':
    Compound: major capsid surface protein sigma-3
    Species: Reovirus type 1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P07939 (0-364)
      • conflict (103)
      • conflict (324)
    Domains in SCOP 1.75: d2csem1
  • Chain 'N':
    Compound: major capsid surface protein sigma-3
    Species: Reovirus type 1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P07939 (0-364)
      • conflict (103)
      • conflict (324)
    Domains in SCOP 1.75: d2csen1
  • Chain 'O':
    Compound: major capsid surface protein sigma-3
    Species: Reovirus type 1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P07939 (0-364)
      • conflict (103)
      • conflict (324)
    Domains in SCOP 1.75: d2cseo1
  • Chain 'P':
    Compound: major outer-capsid protein mu1
    Species: Reovirus type 1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11077
      • conflict (343)
      • conflict (358)
  • Chain 'Q':
    Compound: major outer-capsid protein mu1
    Species: Reovirus type 1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11077
      • conflict (343)
      • conflict (358)
  • Chain 'R':
    Compound: major outer-capsid protein mu1
    Species: Reovirus type 1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11077
      • conflict (343)
      • conflict (358)
  • Chain 'S':
    Compound: major capsid surface protein sigma-3
    Species: Reovirus type 1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P07939 (0-364)
      • conflict (103)
      • conflict (324)
    Domains in SCOP 1.75: d2cses1
  • Chain 'T':
    Compound: major outer-capsid protein mu1
    Species: Reovirus type 1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11077
      • conflict (343)
      • conflict (358)
  • Chain 'U':
    Compound: guanylyltransferase
    Species: Reovirus type 3
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11079 (Start-1288)
      • conflict (608)
    Domains in SCOP 1.75: d2cseu1
  • Chain 'V':
    Compound: major core protein lambda 1
    Species: Reovirus type 1
    Database cross-references and differences (RAF-indexed):
  • Chain 'W':
    Compound: major core protein lambda 1
    Species: Reovirus type 1
    Database cross-references and differences (RAF-indexed):
  • Chain 'X':
    Compound: Sigma 2 protein
    Species: Reovirus type 1
    Database cross-references and differences (RAF-indexed):
  • Chain 'Y':
    Compound: Sigma 2 protein
    Species: Reovirus type 1
    Database cross-references and differences (RAF-indexed):
  • Chain 'Z':
    Compound: Sigma 2 protein
    Species: Reovirus type 1
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:

  • Chain '1':
    No sequence available.

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2cseD (D:)
mevclpnghqivdlinnafegrvsiysaqegwdktisaqpdmmvcggavvcmhclgvvgs
lqrklkhlphhrcnqqirhqdyvdvqfadrvtahwkrgmlsfvcqmhammndvspedldr
vrteggslvelnwlqvdpnsmfrsihsswtdplqvvddldtkldqywtalnlmidssdlv
pnfmmrdpshafngvrlegdarqtqfsrtfdsrsslewgvmvydyselehdpskgrayrk
elvtpardfghfglshysrattpilgkmpavfsgmltgnckmypfikgtaklktvrklvd
svnhawgvekiryalgpggmtgwynrtmqqapivltpaaltmfsdttkfgdldypvmigd
pmilg

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2cseE (E:)
mevclpnghqivdlinnafegrvsiysaqegwdktisaqpdmmvcggavvcmhclgvvgs
lqrklkhlphhrcnqqirhqdyvdvqfadrvtahwkrgmlsfvcqmhammndvspedldr
vrteggslvelnwlqvdpnsmfrsihsswtdplqvvddldtkldqywtalnlmidssdlv
pnfmmrdpshafngvrlegdarqtqfsrtfdsrsslewgvmvydyselehdpskgrayrk
elvtpardfghfglshysrattpilgkmpavfsgmltgnckmypfikgtaklktvrklvd
svnhawgvekiryalgpggmtgwynrtmqqapivltpaaltmfsdttkfgdldypvmigd
pmilg

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2cseF (F:)
mevclpnghqivdlinnafegrvsiysaqegwdktisaqpdmmvcggavvcmhclgvvgs
lqrklkhlphhrcnqqirhqdyvdvqfadrvtahwkrgmlsfvcqmhammndvspedldr
vrteggslvelnwlqvdpnsmfrsihsswtdplqvvddldtkldqywtalnlmidssdlv
pnfmmrdpshafngvrlegdarqtqfsrtfdsrsslewgvmvydyselehdpskgrayrk
elvtpardfghfglshysrattpilgkmpavfsgmltgnckmypfikgtaklktvrklvd
svnhawgvekiryalgpggmtgwynrtmqqapivltpaaltmfsdttkfgdldypvmigd
pmilg

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2cseG (G:)
mevclpnghqivdlinnafegrvsiysaqegwdktisaqpdmmvcggavvcmhclgvvgs
lqrklkhlphhrcnqqirhqdyvdvqfadrvtahwkrgmlsfvcqmhammndvspedldr
vrteggslvelnwlqvdpnsmfrsihsswtdplqvvddldtkldqywtalnlmidssdlv
pnfmmrdpshafngvrlegdarqtqfsrtfdsrsslewgvmvydyselehdpskgrayrk
elvtpardfghfglshysrattpilgkmpavfsgmltgnckmypfikgtaklktvrklvd
svnhawgvekiryalgpggmtgwynrtmqqapivltpaaltmfsdttkfgdldypvmigd
pmilg

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2cseH (H:)
mevclpnghqivdlinnafegrvsiysaqegwdktisaqpdmmvcggavvcmhclgvvgs
lqrklkhlphhrcnqqirhqdyvdvqfadrvtahwkrgmlsfvcqmhammndvspedldr
vrteggslvelnwlqvdpnsmfrsihsswtdplqvvddldtkldqywtalnlmidssdlv
pnfmmrdpshafngvrlegdarqtqfsrtfdsrsslewgvmvydyselehdpskgrayrk
elvtpardfghfglshysrattpilgkmpavfsgmltgnckmypfikgtaklktvrklvd
svnhawgvekiryalgpggmtgwynrtmqqapivltpaaltmfsdttkfgdldypvmigd
pmilg

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2cseI (I:)
mevclpnghqivdlinnafegrvsiysaqegwdktisaqpdmmvcggavvcmhclgvvgs
lqrklkhlphhrcnqqirhqdyvdvqfadrvtahwkrgmlsfvcqmhammndvspedldr
vrteggslvelnwlqvdpnsmfrsihsswtdplqvvddldtkldqywtalnlmidssdlv
pnfmmrdpshafngvrlegdarqtqfsrtfdsrsslewgvmvydyselehdpskgrayrk
elvtpardfghfglshysrattpilgkmpavfsgmltgnckmypfikgtaklktvrklvd
svnhawgvekiryalgpggmtgwynrtmqqapivltpaaltmfsdttkfgdldypvmigd
pmilg

  • Chain 'J':
    No sequence available.

  • Chain 'K':
    No sequence available.

  • Chain 'L':
    No sequence available.

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2cseM (M:)
mevclpnghqivdlinnafegrvsiysaqegwdktisaqpdmmvcggavvcmhclgvvgs
lqrklkhlphhrcnqqirhqdyvdvqfadrvtahwkrgmlsfvcqmhammndvspedldr
vrteggslvelnwlqvdpnsmfrsihsswtdplqvvddldtkldqywtalnlmidssdlv
pnfmmrdpshafngvrlegdarqtqfsrtfdsrsslewgvmvydyselehdpskgrayrk
elvtpardfghfglshysrattpilgkmpavfsgmltgnckmypfikgtaklktvrklvd
svnhawgvekiryalgpggmtgwynrtmqqapivltpaaltmfsdttkfgdldypvmigd
pmilg

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2cseN (N:)
mevclpnghqivdlinnafegrvsiysaqegwdktisaqpdmmvcggavvcmhclgvvgs
lqrklkhlphhrcnqqirhqdyvdvqfadrvtahwkrgmlsfvcqmhammndvspedldr
vrteggslvelnwlqvdpnsmfrsihsswtdplqvvddldtkldqywtalnlmidssdlv
pnfmmrdpshafngvrlegdarqtqfsrtfdsrsslewgvmvydyselehdpskgrayrk
elvtpardfghfglshysrattpilgkmpavfsgmltgnckmypfikgtaklktvrklvd
svnhawgvekiryalgpggmtgwynrtmqqapivltpaaltmfsdttkfgdldypvmigd
pmilg

  • Chain 'O':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2cseO (O:)
mevclpnghqivdlinnafegrvsiysaqegwdktisaqpdmmvcggavvcmhclgvvgs
lqrklkhlphhrcnqqirhqdyvdvqfadrvtahwkrgmlsfvcqmhammndvspedldr
vrteggslvelnwlqvdpnsmfrsihsswtdplqvvddldtkldqywtalnlmidssdlv
pnfmmrdpshafngvrlegdarqtqfsrtfdsrsslewgvmvydyselehdpskgrayrk
elvtpardfghfglshysrattpilgkmpavfsgmltgnckmypfikgtaklktvrklvd
svnhawgvekiryalgpggmtgwynrtmqqapivltpaaltmfsdttkfgdldypvmigd
pmilg

  • Chain 'P':
    No sequence available.

  • Chain 'Q':
    No sequence available.

  • Chain 'R':
    No sequence available.

  • Chain 'S':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2cseS (S:)
mevclpnghqivdlinnafegrvsiysaqegwdktisaqpdmmvcggavvcmhclgvvgs
lqrklkhlphhrcnqqirhqdyvdvqfadrvtahwkrgmlsfvcqmhammndvspedldr
vrteggslvelnwlqvdpnsmfrsihsswtdplqvvddldtkldqywtalnlmidssdlv
pnfmmrdpshafngvrlegdarqtqfsrtfdsrsslewgvmvydyselehdpskgrayrk
elvtpardfghfglshysrattpilgkmpavfsgmltgnckmypfikgtaklktvrklvd
svnhawgvekiryalgpggmtgwynrtmqqapivltpaaltmfsdttkfgdldypvmigd
pmilg

  • Chain 'T':
    No sequence available.

  • Chain 'U':
    Sequence, based on SEQRES records: (download) 
    >2cseU (U:)
manvwgvrladslssptietrtrqytlhdlcsdldanpgrepwkplrnqrtnnivavqlf
rplqglvldtqlygfpgafddwerfmreklrvlkyevlriypisnysnehvnvfvanalv
gaflsnqafydllplliindtmigdllgtgaslsqffqshgdvlevaagrkylqmenysn
ddddpplfakdlsdyakafysdtyevldrffwthdssagvlvhydkptnghhyllgtltq
mvsappyiinatdamllescleqfsanvrarpaqpvtrldqcyhlrwgaqyvgedsltyr
lgvlsllatngyqlarpiprqltnrwlssfvsqimsdgvnetplwpqeryvqiaydspsv
vdgatqygyvrknqlrlgmrisalqslsdtpspvqwlpqytidqaamdegdlmvsrltql
plrpdygniwvgdalsyyvdynrshrvvlsselpqlpdtyfdgdeqygrslfslarkigd
rslvkdtavlkhayqaidpntgkeylrsrqsvayfgasaghsgadqplviepwiqgkisg
vpppssvrqfgydvargaivdlarpfpsgdyqfvysdvdqvvdghddlsissglveslls
scmhatapggsfvvkinfptrpvwhyieqkilpnitsymlikpfvtnnvelffvafgvhq
hssltwtsgvyfflvdhfyryetlstisrqlpsfgyvddgssvtgietisienpgfsnmt
qaarigisglcanvgnarksiaiyeshgarvltitsrrspasarrksrlrylplidprsl
evqartilpadpvlfenvsgasphvcltmmynfevssavydgdvvldlgtgpeakileli
patspvtcvdirptaqpsgcwnvrttfleldylsdgwitgvrgdivtcmlslgaaaagks
mtfdaafqqlikvlskstanvvlvqvncptdvvrsikgyleidstnkryrfpkfgrdepy
sdmdalekicrtawpncsitwvplsydlrwtrlallesttlssasiriaelmykympimr
idihglpmekrgnfivgqncslvipgfnaqdvfncyfnsalafstedvnaamipqvsaqf
datkgewtldmvfsdagiytmqalvgsnanpvslgsfvvdspdvditdawpaqldftiag
tdvditvnpyyrlmtfvridgqwqianpdkfqffssasgtlvmnvkldiadkyllyyird
vqsrdvgfyiqhplqllntitlptnedlflsapdmrewavkesgnticilnsqgfvlpqd
wdvltdtiswspsiptyivppgdytltpl

    Sequence, based on observed residues (ATOM records): (download) 
    >2cseU (U:)
anvwgvrladslssptietrtrqytlhdlcsdldanpgrepwkplrnqrtnnivavqlfr
plqglvldtqlygfpgafddwerfmreklrvlkyevlriypisnysnehvnvfvanalvg
aflsnqafydllplliindtmigdllgtgaslsqffqshgdvlevaagrkylqmenysnd
dddpplfakdlsdyakafysdtyevldrffwthdssagvlvhydkptnghhyllgtltqm
vsappyiinatdamllescleqfsanvrarpaqpvtrldqcyhlrwgaqyvgedsltyrl
gvlsllatngyqlarpiprqltnrwlssfvsqimsdgvnetplwpqeryvqiaydspsvv
dgatqygyvrknqlrlgmrisalqslsdtpspvqwlpqytidqaamdegdlmvsrltqlp
lrpdygniwvgdalsyyvdynrshrvvlsselpqlpdtyfdgdeqygrslfslarkigdr
slvkdtavlkhayqaidpntgkeylrsrqsvayfgasaghsgadqplviepwiqgkisgv
pppssvrqfgydvargaivdlarpfpsgdyqfvysdvdqvvdghddlsissglvesllss
cmhatapggsfvvkinfptrpvwhyieqkilpnitsymlikpfvtnnvelffvafgvhqh
ssltwtsgvyfflvdhfyryetlstisrqlpsfgyvddgssvtgietisienpgfsnmtq
aarigisglcanvgnarksiaiyeshgarvltitsrrspasarrksrlrylplidprsle
vqartilpadpvlfenvsgasphvcltmmynfevssavydgdvvldlgtgpeakilelip
atspvtcvdirptaqpsgcwnvrttfleldylsdgwitgvrgdivtcmlslgaaaagksm
tfdaafqqlikvlskstanvvlvqvncptdvvrsikgyleidstnkryrfpkfgrdepys
dmdalekicrtawpncsitwvplsydlrwtrlallesttlssasiriaelmykympimri
dihglpmekrgnfivgqncslvipgfnaqdvfncyfnsalafstedvnaamipqvsaqfd
atkgewtldmvfsdagiytmqalvgsnanpvslgsfvvdspdvditdawpaqldftiagt
dvditvnpyyrlmtfvridgqwqianpdkfqffstlvmnvkldiadkyllyyirdvqsrd
vgfyiqhplqllntitlptnedlflsapdmrewavkesgnticilnsqgfvlpqdwdvlt
dtiswspsiptyivppgdytltpl

  • Chain 'V':
    No sequence available.

  • Chain 'W':
    No sequence available.

  • Chain 'X':
    No sequence available.

  • Chain 'Y':
    No sequence available.

  • Chain 'Z':
    No sequence available.