PDB entry 2clw
View 2clw on RCSB PDB site
Description: Crystal structure of human ubiquitin-conjugating enzyme UbcH5B
Class: ligase
Keywords: ligase, ubl conjugation pathway, ubc domain, thioesterification
Deposited on
2006-05-02, released
2007-06-12
The last revision prior to the SCOPe 2.05 freeze date was dated
2014-08-13, with a file datestamp of
2014-08-08.
Experiment type: XRAY
Resolution: 1.94 Å
R-factor: 0.218
AEROSPACI score: 0.35
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: ubiquitin-conjugating enzyme e2 d2
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 2CLW (Start-17)
- Uniprot P62837 (18-164)
Domains in SCOPe 2.05: d2clwa_ - Chain 'B':
Compound: ubiquitin-conjugating enzyme e2 d2
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 2CLW (Start-17)
- Uniprot P62837 (18-164)
Domains in SCOPe 2.05: d2clwb_ - Chain 'C':
Compound: ubiquitin-conjugating enzyme e2 d2
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 2CLW (Start-17)
- Uniprot P62837 (18-164)
Domains in SCOPe 2.05: d2clwc_ - Chain 'D':
Compound: ubiquitin-conjugating enzyme e2 d2
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 2CLW (Start-17)
- Uniprot P62837 (18-164)
Domains in SCOPe 2.05: d2clwd_ - Heterogens: SO4, GOL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2clwA (A:)
mkhhhhhhpmsglvprgsmalkrihkelndlardppaqcsagpvgddmfhwqatimgpnd
spyqggvffltihfptdypfkppkvafttriyhpninsngsicldilrsqwspaltiskv
llsicsllcdpnpddplvpeiariyktdrekynriarewtqkyam
Sequence, based on observed residues (ATOM records): (download)
>2clwA (A:)
rgsmalkrihkelndlardppaqcsagpvgddmfhwqatimgpndspyqggvffltihfp
tdypfkppkvafttriyhpninsngsicldilrsqwspaltiskvllsicsllcdpnpdd
plvpeiariyktdrekynriarewtqkyam
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2clwB (B:)
mkhhhhhhpmsglvprgsmalkrihkelndlardppaqcsagpvgddmfhwqatimgpnd
spyqggvffltihfptdypfkppkvafttriyhpninsngsicldilrsqwspaltiskv
llsicsllcdpnpddplvpeiariyktdrekynriarewtqkyam
Sequence, based on observed residues (ATOM records): (download)
>2clwB (B:)
rgsmalkrihkelndlardppaqcsagpvgddmfhwqatimgpndspyqggvffltihfp
tdypfkppkvafttriyhpninsngsicldilrsqwspaltiskvllsicsllcdpnpdd
plvpeiariyktdrekynriarewtqkyam
- Chain 'C':
Sequence, based on SEQRES records: (download)
>2clwC (C:)
mkhhhhhhpmsglvprgsmalkrihkelndlardppaqcsagpvgddmfhwqatimgpnd
spyqggvffltihfptdypfkppkvafttriyhpninsngsicldilrsqwspaltiskv
llsicsllcdpnpddplvpeiariyktdrekynriarewtqkyam
Sequence, based on observed residues (ATOM records): (download)
>2clwC (C:)
rgsmalkrihkelndlardppaqcsagpvgddmfhwqatimgpndspyqggvffltihfp
tdypfkppkvafttriyhpninsngsicldilrsqwspaltiskvllsicsllcdpnpdd
plvpeiariyktdrekynriarewtqkyam
- Chain 'D':
Sequence, based on SEQRES records: (download)
>2clwD (D:)
mkhhhhhhpmsglvprgsmalkrihkelndlardppaqcsagpvgddmfhwqatimgpnd
spyqggvffltihfptdypfkppkvafttriyhpninsngsicldilrsqwspaltiskv
llsicsllcdpnpddplvpeiariyktdrekynriarewtqkyam
Sequence, based on observed residues (ATOM records): (download)
>2clwD (D:)
rgsmalkrihkelndlardppaqcsagpvgddmfhwqatimgpndspyqggvffltihfp
tdypfkppkvafttriyhpninsngsicldilrsqwspaltiskvllsicsllcdpnpdd
plvpeiariyktdrekynriarewtqkyam